Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttatttttttgttatgtatgtcaatacagaactgtaaaacacactgtgctgattatttgtggcatttcaaattttagttctaacatttgtttgttatagTGCAATGGGAGTGGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCATGTTGTAGTCTATTCAGATGGCATTTCTCATGATTCGGGTCATGAAGCT

Basic information

species Glycine max
transcript GLYMA10G32860.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192326161|gb|FK016968.1|FK016968
EST:     ACCAACACAGTTGTTGCATTATTTCTTTTTTCCAGATCCAACTTCAAAAT                         TGCAGTGGGAGTGGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
genomic: ACCAACACAGTTGTTGCATTATTTCTTTTTTCCAGATCCAACTTCAAAATgtgagtcatt ... tttgttatagTGCAATGGGAGTGGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
EST: gi|298171716|gb|HO021308.1|HO021308
EST:     GTTGCATTATTTCTTTTTTCCAGATCCAGCTTCAAAAT                         TGCAATGGGAGTGGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
genomic: GTTGCATTATTTCTTTTTTCCAGATCCAACTTCAAAATgtgagtcatt ... tttgttatagTGCAATGGGAGTGGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
EST: gi|7924418|gb|AW830444.1|AW830444
EST:     ACCAACACAGTTGTTGCATTATTTCTTTTTTCCAGATCCAACTTCAAAAT                         TGCAATGGGAGTGGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
genomic: ACCAACACAGTTGTTGCATTATTTCTTTTTTCCAGATCCAACTTCAAAATgtgagtcatt ... tttgttatagTGCAATGGGAGTGGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
EST: gi|193578215|gb|FK533417.1|FK533417
EST:     ACCAACACAGTTGTTGCATTATTTCTTTTTTCCAGATCCAACTTCAAAAT                         TGCAATGGGAGTGGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
genomic: ACCAACACAGTTGTTGCATTATTTCTTTTTTCCAGATCCAACTTCAAAATgtgagtcatt ... tttgttatagTGCAATGGGAGTGGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
EST: gi|8827244|gb|BE210974.1|BE210974
EST:     ACCAACACAGTTGTTGCATTATTTCTTTTTTCCAGATCCAACTTCAAAAT                         TGCAATGGGAGTGGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
genomic: ACCAACACAGTTGTTGCATTATTTCTTTTTTCCAGATCCAACTTCAAAATgtgagtcatt ... tttgttatagTGCAATGGGAGTGGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
EST: gi|193386448|gb|FK349514.1|FK349514
EST:     ACCAACACAGTTGTTGCATTATTTCTTTTTTCCAGATCCAACTTCAAAAT                         TGCAATGGGAGTGGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
genomic: ACCAACACAGTTGTTGCATTATTTCTTTTTTCCAGATCCAACTTCAAAATgtgagtcatt ... tttgttatagTGCAATGGGAGTGGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
EST: gi|193404373|gb|FK365282.1|FK365282
EST:     GTTGCATTATTTTCTTTTTTCCAGATCCAACTTCAAAAT                         TGCAATGGGAGTGGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
genomic: GTTGCATTA-TTTCTTTTTTCCAGATCCAACTTCAAAATgtgagtcatt ... tttgttatagTGCAATGGGAGTGGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
EST: gi|298188231|gb|HO034924.1|HO034924
EST:     ACCAACACAGTTGTTGCATTATTTCTTTTTTCCAGATCCAACTTCAAAAT                         TGCAATGGGAGTGGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
genomic: ACCAACACAGTTGTTGCATTATTTCTTTTTTCCAGATCCAACTTCAAAATgtgagtcatt ... tttgttatagTGCAATGGGAGTGGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
EST: gi|151403086|gb|EV272896.1|EV272896
EST:     CCAGATCCAACTTCAAAAT                         TGCAATGGGAGTGGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
genomic: CCAGATCCAACTTCAAAATgtgagtcatt ... tttgttatagTGCAATGGGAGTGGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
EST: gi|213607099|gb|DB965069.1|DB965069
EST:     ACCAACACAGTTGTTGCATTATTTCTTTTTTCCAGATCCAACTTCAAAAT                         TGCAATGGGAGTGGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA
genomic: ACCAACACAGTTGTTGCATTATTTCTTTTTTCCAGATCCAACTTCAAAATgtgagtcatt ... tttgttatagTGCAATGGGAGTGGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgctgattatttgtggcatttcaaattttagttctaacatttgtttgttatagTGCAATGGGAGTGGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCATGTTGTAGTCTATTCAGATGGCATTTCTCATGATTCGGGTCATGAAGCT
                                 ttctaac  putative branch site (score: 1)
                                         tttgttt  CT-rich tract
                   atttcaaattttagtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cttatttttttgttatgtatgtcaatacagaactgtaaaacacactgtgctgattatttgtggcatttcaaattttagttctaacatttgtttgttatagTGCAATGGGAGTGGAAGATACAGATATTTGTATCATCAAGGAGCCAGATCATGTTGTAGTCTATTCAGATGGCATTTCTCATGATTCGGGTCATGAAGCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC