Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactactcactactcactcacccaactataggggttgtgttgtgatgattgtttcttgacgtctttaactgttccttgttcttagATTGATGAGCTTGCGGCGTTTTCTGACTCACCTGCTCCATCAGTAACCAGGGTCTTGTATACTGACAAGGATGTTTTAGGTCGCAG

Basic information

species Glycine max
transcript GLYMA10G32850.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120532605|gb|EH260738.1|EH260738
EST:     CTTTCCAACCCTCTTCACTCTCCGTTGATGCTCAGGCTCTTCAGAACCAG                         ATTGATGAGCTTGCGGCGTTTTCTGACTCACCTGCTCCATCAGTAACCAGG
genomic: CTTTCCAACCCTCTTCACTCTCCGTTGATGCTCAGGCTCTTCAGAACCAGgtactactca ... ttgttcttagATTGATGAGCTTGCGGCGTTTTCTGACTCACCTGCTCCATCAGTAACCAGG
EST: gi|16347483|gb|BI973078.1|BI973078
EST:     CTTTCCAACCCTCTTCACTCTCCGTTGATGCTCAGGCTCTTCAGAACCAG                         ATTGATGAGCTTGCGGCGTTTTCTGACTCACCTGCTCCATCAGTAACCAGG
genomic: CTTTCCAACCCTCTTCACTCTCCGTTGATGCTCAGGCTCTTCAGAACCAGgtactactca ... ttgttcttagATTGATGAGCTTGCGGCGTTTTCTGACTCACCTGCTCCATCAGTAACCAGG
EST: gi|298176989|gb|HO023350.1|HO023350
EST:     CTTTCCAACCCTCTTCACTCTCCGTTGATGCTCAGGCTCTTCAGAACCAG                         ATTGATGAGCTTGCGGCGTTTTCCGACCCACCTGCTCCATCAGTAACCAGG
genomic: CTTTCCAACCCTCTTCACTCTCCGTTGATGCTCAGGCTCTTCAGAACCAGgtactactca ... ttgttcttagATTGATGAGCTTGCGGCGTTTTCTGACTCACCTGCTCCATCAGTAACCAGG
EST: gi|213595183|gb|DB960190.1|DB960190
EST:     CTTTCCAACCCTCTTCACTCTCCGTTGATGCTCAGGCTCTTCAGAACCAG                         ATTGATGAGCTTGCGGCGTTTTCTGACTCACCTGCTCCATCAGTAACCAGG
genomic: CTTTCCAACCCTCTTCACTCTCCGTTGATGCTCAGGCTCTTCAGAACCAGgtactactca ... ttgttcttagATTGATGAGCTTGCGGCGTTTTCTGACTCACCTGCTCCATCAGTAACCAGG
EST: gi|209723482|gb|BW669483.1|BW669483
EST:     CTTTCCAACCCTCTTCACTCTCCGTTGATGCTCAGGCTCTTCAGAACCAG                         ATTGATGAGCTTGCGGCGTTTTCTGACTCACCTGCTCCATCAGTAACCAGG
genomic: CTTTCCAACCCTCTTCACTCTCCGTTGATGCTCAGGCTCTTCAGAACCAGgtactactca ... ttgttcttagATTGATGAGCTTGCGGCGTTTTCTGACTCACCTGCTCCATCAGTAACCAGG
EST: gi|120532833|gb|EH260966.1|EH260966
EST:     CTTTCCAACCCTCTTCACTCTCCGTTGATGCTCAGGCTCTTCAGAACCAG                         ATTGATGAGCTTGCGGCGTTTTCTGACTCACCTGCTCCATCAGTAACCAGG
genomic: CTTTCCAACCCTCTTCACTCTCCGTTGATGCTCAGGCTCTTCAGAACCAGgtactactca ... ttgttcttagATTGATGAGCTTGCGGCGTTTTCTGACTCACCTGCTCCATCAGTAACCAGG
EST: gi|298179399|gb|HO027870.1|HO027870
EST:     CTTTCCAACCCTCTTCACTCTCCGTTGATGCTCAGGCTCTTCAGAACCAG                         ATTGATGAGCTTGCGGCGTTTTCTGACTCACCTGCTCCATCAGTAACCAGG
genomic: CTTTCCAACCCTCTTCACTCTCCGTTGATGCTCAGGCTCTTCAGAACCAGgtactactca ... ttgttcttagATTGATGAGCTTGCGGCGTTTTCTGACTCACCTGCTCCATCAGTAACCAGG
EST: gi|151408662|gb|EV278470.1|EV278470
EST:     CTTTCCAACCCTCTTCACTCTCCGTTGATGCTCATGCTCTTCAGAACCAG                         ATTGGTGAGCTTGCGGCGTTTTCTGACTCACCTGCTCCATCAGTAACCAGG
genomic: CTTTCCAACCCTCTTCACTCTCCGTTGATGCTCAGGCTCTTCAGAACCAGgtactactca ... ttgttcttagATTGATGAGCTTGCGGCGTTTTCTGACTCACCTGCTCCATCAGTAACCAGG
EST: gi|209700349|gb|BW664386.1|BW664386
EST:     CTTTCCAACCCTCTTCACTCTCCGTTGATGCTCAGGCTCTTCAGAACCAG                         ATTGATGAGCTTGCGGCGTTTTCTGACTCACCTGCTCCATCAGTAACCAGG
genomic: CTTTCCAACCCTCTTCACTCTCCGTTGATGCTCAGGCTCTTCAGAACCAGgtactactca ... ttgttcttagATTGATGAGCTTGCGGCGTTTTCTGACTCACCTGCTCCATCAGTAACCAGG
EST: gi|298171715|gb|HO021307.1|HO021307
EST:     CTTTCCAACCCTCTTCACTCTCCGTTGATGCTCAGGCTCTTCAGAACCAG                         ATTGATGAGCTTGCGGCGTTTTCTGACTCACCTGCTCCACCAGTAACCAGG
genomic: CTTTCCAACCCTCTTCACTCTCCGTTGATGCTCAGGCTCTTCAGAACCAGgtactactca ... ttgttcttagATTGATGAGCTTGCGGCGTTTTCTGACTCACCTGCTCCATCAGTAACCAGG
EST: gi|120532878|gb|EH261011.1|EH261011
EST:     CTTTCCAA-CCTCTTCACTCTCCGTTGATGCTCAGGCTCTTCAGAACCAG                         ATTGATGAGCTTGCGGCGTTTTCTGACTCACCTGCTCCATCAGTAACCAGG
genomic: CTTTCCAACCCTCTTCACTCTCCGTTGATGCTCAGGCTCTTCAGAACCAGgtactactca ... ttgttcttagATTGATGAGCTTGCGGCGTTTTCTGACTCACCTGCTCCATCAGTAACCAGG
EST: gi|15338254|gb|BI498910.1|BI498910
EST:     CTTTCCAACCCTCTTCACTCTCCGTTGATGCTCAGGCTCTTCAGAACCAG                         ATTGATGAGCTTGCGGCGTTTTCTGACTCACCTGCTCCATCAGTAACCAGG
genomic: CTTTCCAACCCTCTTCACTCTCCGTTGATGCTCAGGCTCTTCAGAACCAGgtactactca ... ttgttcttagATTGATGAGCTTGCGGCGTTTTCTGACTCACCTGCTCCATCAGTAACCAGG
EST: gi|213616932|gb|DB959244.1|DB959244
EST:     CTTTCCAACCCTCTTCACTCTCCGTTGATGCTCAGGCTCTTCAGAACCAG                         ATTGATGAGCTTGCGGCGTTTTCTGACTCACCTGCTCCATCAGTAACCAGG
genomic: CTTTCCAACCCTCTTCACTCTCCGTTGATGCTCAGGCTCTTCAGAACCAGgtactactca ... ttgttcttagATTGATGAGCTTGCGGCGTTTTCTGACTCACCTGCTCCATCAGTAACCAGG
EST: gi|209728923|gb|BW654990.1|BW654990
EST:     CTTTCCAACCCTCTTCACTCTCCGTTGATGCTCAGGCTCTTCAGAACCAG                         ATTGATGAGCTTGCGGCGTTTTCTGACTCACCTGCTCCATCAGTAACCAGG
genomic: CTTTCCAACCCTCTTCACTCTCCGTTGATGCTCAGGCTCTTCAGAACCAGgtactactca ... ttgttcttagATTGATGAGCTTGCGGCGTTTTCTGACTCACCTGCTCCATCAGTAACCAGG
EST: gi|193320687|gb|FK286530.1|FK286530
EST:     CTTTCCAACCCTCTTCACTCTCCGTTGATGCTCAGGCTCTTCAGAACCAG                         ATTGATGAGCTTGCGGCGTTTTCTGACTCACCTGCTCCATCAGTAACCAGG
genomic: CTTTCCAACCCTCTTCACTCTCCGTTGATGCTCAGGCTCTTCAGAACCAGgtactactca ... ttgttcttagATTGATGAGCTTGCGGCGTTTTCTGACTCACCTGCTCCATCAGTAACCAGG
EST: gi|24205312|gb|BU964565.1|BU964565
EST:     CTTTCCAACCCTCTTCACTCTCCGTTGATGCTCAGGCTCTTCAGAACCAG                         ATTGATGAGCTTGCGGCGTTTTCTGACTCACCTGCTCCATCAGTAACCAGG
genomic: CTTTCCAACCCTCTTCACTCTCCGTTGATGCTCAGGCTCTTCAGAACCAGgtactactca ... ttgttcttagATTGATGAGCTTGCGGCGTTTTCTGACTCACCTGCTCCATCAGTAACCAGG
EST: gi|209726738|gb|BW654840.1|BW654840
EST:     CTTTCCAACCCTCTTCACTCTCCGTTGATGCTCAGGCTCTTCAGAACCAG                         ATTGATGAGCTTGCGGCGTTTTCTGACTCACCTGCTCCATCAGTAACCAGG
genomic: CTTTCCAACCCTCTTCACTCTCCGTTGATGCTCAGGCTCTTCAGAACCAGgtactactca ... ttgttcttagATTGATGAGCTTGCGGCGTTTTCTGACTCACCTGCTCCATCAGTAACCAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggggttgtgttgtgatgattgtttcttgacgtctttaactgttccttgttcttagATTGATGAGCTTGCGGCGTTTTCTGACTCACCTGCTCCATCAGTAACCAGGGTCTTGTATACTGACAAGGATGTTTTAGGTCGCAG
                                ctttaac  putative branch site (score: 3)
                                      ctgttccttgttctt  CT-rich tract
                 attgttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtactactcactactcactcacccaactataggggttgtgttgtgatgattgtttcttgacgtctttaactgttccttgttcttagATTGATGAGCTTGCGGCGTTTTCTGACTCACCTGCTCCATCAGTAACCAGGGTCTTGTATACTGACAAGGATGTTTTAGGTCGCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG