1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...aacatcactattattttttaaaattctccttggtgtattttttgtatgttcctttcatctatatctgtttaattttttcattgatgcaatatgaaaacagGTTAAGTCATTGCTTGCTGATGCAAAGGCAGGAGCTCCTTTGAATGCACTTGAGAACTCAACAAATACAAATGCTCTGTCAATCAACTCTCTACCTTCCT
species | Glycine max |
transcript | GLYMA10G32500.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTGAGGAGCTATTCACACAGTGGCTTTCGCTTCCAGATACTTGTCGCCTG GTTAAGTCATTGCTTGCTGATGCAAAGGCAGGAGCTCCTTTGAATGCACTTEST: gi|22525064|gb|BU083875.1|BU083875
genomic: TTGAGGAGCTATTCACACAGTGGCTTTCGCTTCCAGATACTTGTCGCCTGgtacacacta ... atgaaaacagGTTAAGTCATTGCTTGCTGATGCAAAGGCAGGAGCTCCTTTGAATGCACTT
EST: CACACAGTGGCTTTCGCTTCCAGATACTTGTCGCCTG GTTAAGTCATTGCTTGCTGATGCAAAGGCAGGAGCTCCTTTGAATGCACTTEST: gi|193337969|gb|FK302476.1|FK302476
genomic: CACACAGTGGCTTTCGCTTCCAGATACTTGTCGCCTGgtacacacta ... atgaaaacagGTTAAGTCATTGCTTGCTGATGCAAAGGCAGGAGCTCCTTTGAATGCACTT
EST: TTGAGGAGCTATTCACACAGTGGCTTTCGCTTCCAGATACTTGTCGCCTG GTTAAGTCATTGCTTGCTGATGCAAAGGCAGGAGCTCCTTTGAATGCACTT
genomic: TTGAGGAGCTATTCACACAGTGGCTTTCGCTTCCAGATACTTGTCGCCTGgtacacacta ... atgaaaacagGTTAAGTCATTGCTTGCTGATGCAAAGGCAGGAGCTCCTTTGAATGCACTT
atgttcctttcatctatatctgtttaattttttcattgatgcaatatgaaaacagGTTAAGTCATTGCTTGCTGATGCAAAGGCAGGAGCTCCTTTGAATGCACTTGAGAACTCAACAAATACAAATGCTCTGTCAATCAACTCTCTACCTTCCT
cattgat putative branch site (score: 4)
tatatctgtttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacatcactattattttttaaaattctccttggtgtattttttgtatgttcctttcatctatatctgtttaattttttcattgatgcaatatgaaaacagGTTAAGTCATTGCTTGCTGATGCAAAGGCAGGAGCTCCTTTGAATGCACTTGAGAACTCAACAAATACAAATGCTCTGTCAATCAACTCTCTACCTTCCT
-acatcac
- - - - - - - - - - - - -ctccttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgca