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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgtattcccatcccaatctcaaatcaaatcaaatcattttcattctaattccaatgcattcattcctatcagATTGACTCTTTAGACACTTTGGCTTTACTTGGTGACCGCCAACGATTCTCTGCTTCCGTTGAATGGATTGGTAAAAATCTTCGCTTTGATATA

Basic information

species Glycine max
transcript GLYMA10G32320.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G32320.1 (Glycine max), 3'ss of exon 1
lower sequence: AT5G43710.1 (Arabidopsis thaliana), 3'ss of exon 2
----gttcgtattcccatcccaatctcaaatcaaatcaaatcattttca-----ttctaattccaatgcattcattcctatcagATTGACTCTTTAGACACTTTGGCTTTACTTGGTGACCGCCAACGATTCTCTGCTTCCGTTGAATGGATTGGTAAAAATCTTCGCTTTGATATA
    | |   ||    | ||   |||    | |       || | |  |     |   |||     ||    ||||  | | |||||||||| || || || || |||||||||||||||||  | || ||| || |||| |||||||||||||||||||||||||  ||| |||||
gtaagctttaatatataaccttctcttgtgtaaggctttgtcttatgtaaaacttgacaatggttttggtggcatttgtgt-agATTGACTCGTTGGATACATTAGCTTTACTTGGTGACCGAGAGCGCTTCACTTCTTCTGTTGAATGGATTGGTAAAAATCTTCAGTTTAATATA

upper sequence: GLYMA10G32320.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv05s0020g04650.t01 (Vitis vinifera), 3'ss of exon 2
-----------------------gttcgtattcccatcccaatctcaaatcaaa--tcaaatcattttcattctaattccaatgcattcat-tcctatcagATTGACTCTTTAGACACTTTGGCTTTACTTGGTGACCGCCAACGATTCTCTGCTTCCGTTGAATGGATTGGTAAAAATCTTCGCTTTGATATA
                       |||| | |     |    || |   ||  ||  |   || ||   | ||   ||     ||   |||| || |  ||||||||||| ||||||||  | |||||| | ||||||||  | || ||  || | || |||||||||||||||||||| ||||| |||||||| 
gtatgagaaattcattttcttttgttcttttgaatttatttatttgttattgaacttttcataataaacttttatatcatgttggcatcatgtcatcacagATTGACTCCTTAGACACACTAGCTTTATTGGGTGACCGAGAGCGGTTTGCTACCTCAGTTGAATGGATTGGTAAAAACCTTCGGTTTGATATT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151394610|gb|EV264481.1|EV264481
EST:     CTCTCTCCTGCGCAGGACATGATACGCTTGGTGGCTATGCGTTAACCTTG                         ATTGACTCTTTAGACACTTTGGCTTTACTTGGTGACCGCCAACGATTCTCT
genomic: CTCTCTCCTGCGCAGGACATGATACGCTTGGTGGCTATGCGTTAACCTTGgttcgtattc ... ttcctatcagATTGACTCTTTAGACACTTTGGCTTTACTTGGTGACCGCCAACGATTCTCT
EST: gi|193364513|gb|FK333554.1|FK333554
EST:     CTCTCTCCTGCGCAGGACATGATACGCTTGGTGGCTATGCGTTAACCTTG                         ATTGACTCTTTAGACACTTTGGCTTTACTTGGTGACCGCCAACGATTCTCT
genomic: CTCTCTCCTGCGCAGGACATGATACGCTTGGTGGCTATGCGTTAACCTTGgttcgtattc ... ttcctatcagATTGACTCTTTAGACACTTTGGCTTTACTTGGTGACCGCCAACGATTCTCT
EST: gi|213590535|gb|DB968099.1|DB968099
EST:     CTCTCTCCTGCGCAGGACATGATACGCTTGGTGGCTATGCGTTAACCTTG                         ATTGACTCTTTAGACACTTTGGCTTTACTTGGTGACCGCCAACGATTCTCT
genomic: CTCTCTCCTGCGCAGGACATGATACGCTTGGTGGCTATGCGTTAACCTTGgttcgtattc ... ttcctatcagATTGACTCTTTAGACACTTTGGCTTTACTTGGTGACCGCCAACGATTCTCT
EST: gi|193433551|gb|FK403637.1|FK403637
EST:     CTCTCTCCTGCGCAGGACATGATACGCTTGGTGGCTATGCGTTAACCTTG                         ATTGACTCTTTAGACACTTTGGCTTTACTTGGTGACCGCCAACGATTCTCT
genomic: CTCTCTCCTGCGCAGGACATGATACGCTTGGTGGCTATGCGTTAACCTTGgttcgtattc ... ttcctatcagATTGACTCTTTAGACACTTTGGCTTTACTTGGTGACCGCCAACGATTCTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcaaatcaaatcaaatcattttcattctaattccaatgcattcattcctatcagATTGACTCTTTAGACACTTTGGCTTTACTTGGTGACCGCCAACGATTCTCTGCTTCCGTTGAATGGATTGGTAAAAATCTTCGCTTTGATATA
                         ttctaat  putative branch site (score: 2)
                                         ttcattcct  putative PPT
        aaatcaaatcatttt  TA-rich tract