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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcaattccaattctatagactttgattcgtttaatttttccgttaaatttgttgcttacgattatggcatgcagATGGTGGCAGTGGATTCGGATGATCTCTGGTTTGCGTATAACTTGATAGCTCCCGGAGACTCTGTCATGGCCGTTACTGTCAG

Basic information

species Glycine max
transcript GLYMA10G31310.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G31310.1 (Glycine max), 3'ss of exon 1
lower sequence: AT4G27650.1 (Arabidopsis thaliana), 3'ss of exon 2
-------------------------gtgcaattccaattctatagactttgattcgtttaatttttccgttaaatttgttgcttacgattatggcatgcagATGGTGGCAGTGGATTCGGATGATCTCTGGTTTGCGTATAACTTGATAGCTCCCGGAGACTCTGTCATGGCCGTTACTGTCAG
                         ||||||||| ||| || |||    |||    ||| ||||||    |     |||||   ||    || |   | |||||||||||| ||| || ||||||||||||| ||| ||||||||||| |||   || ||   ||| ||||| || ||| ||||
gtttgattgattcctttttcctcgtgtgcaattcaaatgct-tag---ctga--aatttgatttttgtcctgtgggtgttggcaacttaaattgagggtagATGGTGGCAGAGGACTCTGATGATCTCTGGTATGCTTATAACTTGATTGCTGTGGGCGATAGTGTAATGGCTGTCACTTTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttgattcgtttaatttttccgttaaatttgttgcttacgattatggcatgcagATGGTGGCAGTGGATTCGGATGATCTCTGGTTTGCGTATAACTTGATAGCTCCCGGAGACTCTGTCATGGCCGTTACTGTCAG
                                 tgcttac  putative branch site (score: 2)
          tttaatttttccgtta  TA-rich tract