1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttccttccctttccctcttcgcattttcgcattcactttccctaactagctgcttcgttgcattcagGAGAGGCGCTATCTGTTGAAGGAGTTCCCCGAACTTCTCTCCTGTCCCCCAAACTCTATGCTCTTGGAAGTTGGTTGTGGCAATGGCAGCACCGCTCTTC
species | Glycine max |
transcript | GLYMA10G31030.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGCATGGAAGCAATTTCACCTCCGTCACGCCTCTGGAAAATTCTTCAAG GAGAGGCGCTATCTGTTGAAGGAGTTCCCCGAACTTCTCTCCTGTCCCCCAEST: gi|298164062|gb|HO013707.1|HO013707
genomic: AAGCATGGAAGCAATTTCACCTCCGTCACGCCTCTGGAAAATTCTTCAAGgttccttccc ... ttgcattcagGAGAGGCGCTATCTGTTGAAGGAGTTCCCCGAACTTCTCTCCTGTCCCCCA
EST: AAGCATGGAAGCAATTTCACCTCCGTCACGCCTCTGGAAAATTCTTCAAG GAGAGGCGCTATCTGTTGAAGGAGTTCCCCGAACTTCTCTCCTGTCCCCCAEST: gi|298184989|gb|HO030202.1|HO030202
genomic: AAGCATGGAAGCAATTTCACCTCCGTCACGCCTCTGGAAAATTCTTCAAGgttccttccc ... ttgcattcagGAGAGGCGCTATCTGTTGAAGGAGTTCCCCGAACTTCTCTCCTGTCCCCCA
EST: AAGCATGGAAGCAATTTCACCTCCGTCACGCCTCTGGAAAATTCTTCAAG GAGAGGCGCTATCTGTTGAAGGAGTTCCCCGAACTTCTCTCCTGTCCCCCAEST: gi|16997128|gb|BM086500.1|BM086500
genomic: AAGCATGGAAGCAATTTCACCTCCGTCACGCCTCTGGAAAATTCTTCAAGgttccttccc ... ttgcattcagGAGAGGCGCTATCTGTTGAAGGAGTTCCCCGAACTTCTCTCCTGTCCCCCA
EST: AAGCATGGAAGCAATTTCACCTCCGTCACGCCTCTGGAAAATTCTTCAAG GAGAGGCGCTATCTGTTGAAGGAGTTCCCCGAACTTCTCTCCTGTCCCCCAEST: gi|298172734|gb|HO019774.1|HO019774
genomic: AAGCATGGAAGCAATTTCACCTCCGTCACGCCTCTGGAAAATTCTTCAAGgttccttccc ... ttgcattcagGAGAGGCGCTATCTGTTGAAGGAGTTCCCCGAACTTCTCTCCTGTCCCCCA
EST: AAGCATGGAAGCAATTTCACCTCCGTCACGCCTCTGGAAAATTCTTCAAG GAGAGGCGCTATCTGTTGAAGGAGTTCCCCGAACTTCTCTCCTGTCCCCCA
genomic: AAGCATGGAAGCAATTTCACCTCCGTCACGCCTCTGGAAAATTCTTCAAGgttccttccc ... ttgcattcagGAGAGGCGCTATCTGTTGAAGGAGTTCCCCGAACTTCTCTCCTGTCCCCCA
ccctcttcgcattttcgcattcactttccctaactagctgcttcgttgcattcagGAGAGGCGCTATCTGTTGAAGGAGTTCCCCGAACTTCTCTCCTGTCCCCCAAACTCTATGCTCTTGGAAGTTGGTTGTGGCAATGGCAGCACCGCTCTTC
ccctaac putative branch site (score: 2)
cttcgtt putative PPT
atttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttccttccctttccctcttcgcattttcgcattcactttccctaactagctgcttcgttgcattcagGAGAGGCGCTATCTGTTGAAGGAGTTCCCCGAACTTCTCTCCTGTCCCCCAAACTCTATGCTCTTGGAAGTTGGTTGTGGCAATGGCAGCACCGCTCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG