Sequence
atgc intronic sequence ATGC exonic sequencegtactcttttcctttgcgaaatgtattaacgcggaaccagaaatgaaattttgtgatcactttatattaaatttaatatcagtgtttcattttatatgaatcctagattttgttagttataacttattattaagtgatactgttgattatagaactcgtggatagggtaaagggttttatgattggtttttttgtagGCTGATGGGTGGATAGTTGAGAAGATTAGTTTATTGGCGAATCCTAATCAAGTACGTCCAAAGAGATTTTGGGGT
Basic information
species | Glycine max |
transcript | GLYMA10G30700.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G30700.1 (Glycine max), 3'ss of exon 1
lower sequence: AT5G18480.1 (Arabidopsis thaliana), 3'ss of exon 1
gtactcttttcctttgcgaaatgtattaacgcggaaccagaaatgaaattttgtgatcactttatattaaatttaatatcagtgtttcattttatatgaatcctagattttgttagttataacttattattaagtgatactgttgattatagaactcgtggatagggtaaagggttttatgattggtttttttgtagGCTGATGGGTGGATAGTTGAGAAGATTAGTTTATTGGCGAATCCTAATCAAGTACGTCCAAAGAGATTTTGGGGT-------------------------
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---------------------------------------------------------------------gtttggtttttattgtctagttata-gtagtttaaagatctaaagagttctc-ctttcgattgagtttgagcttaaatttgatcacatactgctttgtttaaagttgtt-tgcttt-tgattctatagGCTGATGGATGGAAAGTAGAGAAGATTAGTTTACTGGCAAATCCAAATCAAGTTCATCCGACTAGGTTCTGGGGTGTTTATACAAAGCTTAAGATCTTTA
upper sequence: GLYMA10G30700.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv14s0036g00430.t01 (Vitis vinifera), 3'ss of exon 1
gtactcttttcctttgcgaaatgtattaacgcggaaccagaaatgaaattttgtgatcactttatattaaatttaatatcagtgtttcattttatatgaatcctagattttgttagttataacttattattaagtgatactgttgattatagaactcgtggatagggtaaagggttttatgattggtttttttgtagGCTGATGGGTGGATAGTTGAGAAGATTAGTTTATTGGCGAATCCTAATCAAGTACGTCCAAAGAGATTTTGGGGT-------------------------
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---------------------------------------------------------------------------------------agagacagttgaatgtttgac--tactgctgctattttactgt-gattgtttttacttatc-taatattctttg----gggatcggttctggtgaata--ttgtgtacagGCTGATGGTTGGATTGTGGAGCTTATTAGTTTACTGGCAAACCCTAACCAAGTGCGGCCAAAGAGATTTTGGGGTGTCTACACAAAGCTAAAAATATTTA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgattatagaactcgtggatagggtaaagggttttatgattggtttttttgtagGCTGATGGGTGGATAGTTGAGAAGATTAGTTTATTGGCGAATCCTAATCAAGTACGTCCAAAGAGATTTTGGGGT
tgttgat putative branch site (score: 4)
tttttttgt putative PPT
ttttatgatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtactcttttcctttgcgaaatgtattaacgcggaaccagaaatgaaattttgtgatcactttatattaaatttaatatcagtgtttcattttatatgaatcctagattttgttagttataacttattattaagtgatactgttgattatagaactcgtggatagggtaaagggttttatgattggtttttttgtagGCTGATGGGTGGATAGTTGAGAAGATTAGTTTATTGGCGAATCCTAATCAAGTACGTCCAAAGAGATTTTGGGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA