1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tacaactatagctgattgatcaacttccgtattaaaaataataggattgaaacattgtgaaattttcagttgagtgaatttgtcttccatttgtttgcagGATTTGGATGCTGGACAGTCTCTTTATGGGGACAAGGCAAAGACAAAGACTTTTTCAGCACGGTTTGCATCTTCCGATGG
species | Glycine max |
transcript | GLYMA10G29800.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGTTTGCCATTCGAGTCCCACCGGAGTTTAAGGATATCACGGAACCTGAG GATTTGGATGCTGGACAGTCTCTTTATGGGGACAAGGCAAAGACAAAGACTEST: gi|8670323|gb|BE191430.1|BE191430
genomic: GGTTTGCCATTCGAGTCCCACCGGAGTTTAAGGATATCACGGAACCTGAGgtgcatttaa ... ttgtttgcagGATTTGGATGCTGGACAGTCTCTTTATGGGGACAAGGCAAAGACAAAGACT
EST: GGTTTGCCATTCGAGTCCCACCGGAGTTTAAGGATATCACGGAACCTGAG GATTTGGATGCTGGACAGTCTCTTTATGGGGACAAGGCAAAGACAAAGACTEST: gi|10846375|gb|BF069284.1|BF069284
genomic: GGTTTGCCATTCGAGTCCCACCGGAGTTTAAGGATATCACGGAACCTGAGgtgcatttaa ... ttgtttgcagGATTTGGATGCTGGACAGTCTCTTTATGGGGACAAGGCAAAGACAAAGACT
EST: GGTTTGCCATTCGAGTCCCACCGGAGTTTAAGGATATCACGGAACCTGAG GATTTGGATGCTGGACAGTCTCTTTATGGGGACAAGGCAAAGACAAAGACT
genomic: GGTTTGCCATTCGAGTCCCACCGGAGTTTAAGGATATCACGGAACCTGAGgtgcatttaa ... ttgtttgcagGATTTGGATGCTGGACAGTCTCTTTATGGGGACAAGGCAAAGACAAAGACT
attgaaacattgtgaaattttcagttgagtgaatttgtcttccatttgtttgcagGATTTGGATGCTGGACAGTCTCTTTATGGGGACAAGGCAAAGACAAAGACTTTTTCAGCACGGTTTGCATCTTCCGATGG
tttgtcttccattt CT-rich tract
tgaaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacaactatagctgattgatcaacttccgtattaaaaataataggattgaaacattgtgaaattttcagttgagtgaatttgtcttccatttgtttgcagGATTTGGATGCTGGACAGTCTCTTTATGGGGACAAGGCAAAGACAAAGACTTTTTCAGCACGGTTTGCATCTTCCGATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG