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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacacttttttttccaacttcaacaatctctattcaccgttcagcttcactttcgctaaactagttcacttgctgttttcagGAAGGTAAGGACGTGGTTGCACGTGCCAAAACAGGTTCGGGAAAGACACTCGCGTACCTTCTCCCGTTGCTTCAGAAACTGTTTACTGCTAACTCTGATC

Basic information

species Glycine max
transcript GLYMA10G29360.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7588541|gb|AW704264.1|AW704264
EST:     GAATCGAGAAACCTACTCCAATTCAGCGCGTCGCGATTCCACTCATTCTG                         GAAGGTAAGGACGTGGTTGCACGTGCCAAAACAGGTTCGGGAAAGACACTC
genomic: GAATCGAGAAACCTACTCCAATTCAGCGCGTCGCGATTCCACTCATTCTGgtaacacttt ... ctgttttcagGAAGGTAAGGACGTGGTTGCACGTGCCAAAACAGGTTCGGGAAAGACACTC
EST: gi|23726946|gb|BU761485.1|BU761485
EST:     GAATCGAGAAACCTACTCCAATTCAGCGCGTCGCGATTCCACTCATTCTG                         GAAGGTAAGGACGTGGTTGCACGTGCCAAAACAGGTTCGGGAAAGACACTC
genomic: GAATCGAGAAACCTACTCCAATTCAGCGCGTCGCGATTCCACTCATTCTGgtaacacttt ... ctgttttcagGAAGGTAAGGACGTGGTTGCACGTGCCAAAACAGGTTCGGGAAAGACACTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctattcaccgttcagcttcactttcgctaaactagttcacttgctgttttcagGAAGGTAAGGACGTGGTTGCACGTGCCAAAACAGGTTCGGGAAAGACACTCGCGTACCTTCTCCCGTTGCTTCAGAAACTGTTTACTGCTAACTCTGATC
                          cgctaaa  putative branch site (score: 3)
                                             ctgttttc  putative PPT
                             taaacta  TA-rich tract