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...tagatctgcttgaggcagtggagagtcttttggatttctattcattattgaacatgaatcttattaaggcttttatttttgttttcgaatttgttattagGATTTCTTTGACAGGGTTCCAGAGATGTTTAATTTTAAACAAAGATGAGCAGAACTGAATTATCTAATATGAAGCAACCTCCTGTTCCCCTGGCAACCCT
species | Glycine max |
transcript | GLYMA10G29060.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TAGGATCTTTTCCTCCAAATGCTGAATCTTCCATCTCCTATTTTTCACCT GATTTCTTTGACAGGGTTCCAGAGATGTTTAATTT-AAACAAAGATGAGCAEST: gi|7589002|gb|AW704785.1|AW704785
genomic: TAGGATCTTTTCCTCCAAATGCTGAATCTTCCATCTCC-ATTTTTCACCTgtgagtccac ... ttgttattagGATTTCTTTGACAGGGTTCCAGAGATGTTTAATTTTAAACAAAGATGAGCA
EST: TTCCATCTCCATTTTTCACCT GATTTCTTTGACAGGGTTCCAGAGATGTTTAATTTTAAACAAAGATGAGCAEST: gi|213620428|gb|DB957325.1|DB957325
genomic: TTCCATCTCCATTTTTCACCTgtgagtccac ... ttgttattagGATTTCTTTGACAGGGTTCCAGAGATGTTTAATTTTAAACAAAGATGAGCA
EST: TTAGGATCTTTTCCTCCAAATGCTGAATCTTCCATCTCCATTTTTCACCT GATTTCTTTGACAGGGTTCCAGAGATGTTTAATTTTAAACAAAGATGAGCAEST: gi|298184440|gb|HO029653.1|HO029653
genomic: TTAGGATCTTTTCCTCCAAATGCTGAATCTTCCATCTCCATTTTTCACCTgtgagtccac ... ttgttattagGATTTCTTTGACAGGGTTCCAGAGATGTTTAATTTTAAACAAAGATGAGCA
EST: TTAGGATCTTTTCCTCCAAATGCTGAATCTTCCATCTCCATTTTTCACCT GATTTCTTTGACAGGGTTCCAGAGATGTTTAATTTTAAACAAAGATGAGCA
genomic: TTAGGATCTTTTCCTCCAAATGCTGAATCTTCCATCTCCATTTTTCACCTgtgagtccac ... ttgttattagGATTTCTTTGACAGGGTTCCAGAGATGTTTAATTTTAAACAAAGATGAGCA
tattgaacatgaatcttattaaggcttttatttttgttttcgaatttgttattagGATTTCTTTGACAGGGTTCCAGAGATGTTTAATTTTAAACAAAGATGAGCAGAACTGAATTATCTAATATGAAGCAACCTCCTGTTCCCCTGGCAACCCT
ttttatttttgttttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagatctgcttgaggcagtggagagtcttttggatttctattcattattgaacatgaatcttattaaggcttttatttttgttttcgaatttgttattagGATTTCTTTGACAGGGTTCCAGAGATGTTTAATTTTAAACAAAGATGAGCAGAACTGAATTATCTAATATGAAGCAACCTCCTGTTCCCCTGGCAACCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - tgcttga
- - - - - - - - - tggagag
- - - - - - - - - - - - - cttttgg
- - - - - - - - - - - - - - - - - - -ctattca
- - - - - - - - - - - - - - - - - - - - - - - - - - catgaat