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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcgctggataggatttaattaaatgattgatcgtgctattgaatgttgattcctttcagatttaggtgattaattagattttcttgtgtgtgtggtgcagCCCGTGGGTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTCTTCAAG

Basic information

species Glycine max
transcript GLYMA10G28620.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193661783|gb|FK605229.1|FK605229
EST:     CTCTGATTGATTACTTGCAAGCTTCATCTGCACTCATGGATCCCAACCAG                         CCCGTGGGTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTC
genomic: CTCTGATTGATTACTTGCAAGCTTCATCTGCACTCATGGATCCCAACCAGgtaactcaac ... tgtggtgcagCCCGTGGGTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTC
EST: gi|18719390|gb|BM523167.1|BM523167
EST:     CTCTGATTGATTACTTGCAAGCTTCATCTGCACTCATGGATCCCAACCAG                         CCCGTGGGTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTC
genomic: CTCTGATTGATTACTTGCAAGCTTCATCTGCACTCATGGATCCCAACCAGgtaactcaac ... tgtggtgcagCCCGTGGGTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTC
EST: gi|298168658|gb|HO009588.1|HO009588
EST:     CTCTGATTGATTACTTGCAAGCTTCATCTGCACTCATGGATCCCAACCAG                         CCCGTGGGTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTC
genomic: CTCTGATTGATTACTTGCAAGCTTCATCTGCACTCATGGATCCCAACCAGgtaactcaac ... tgtggtgcagCCCGTGGGTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTC
EST: gi|192322592|gb|FK014713.1|FK014713
EST:     CTCTGATTGATTACTTGCAAGCTTCATCTGCACTCATGGATCCCAACCAG                         CCCGTGGGTGAAAACTACGTCAATCCCAGGACTTGCTTCTTTCATGTCCTC
genomic: CTCTGATTGATTACTTGCAAGCTTCATCTGCACTCATGGATCCCAACCAGgtaactcaac ... tgtggtgcagCCCGTGGGTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTC
EST: gi|10843334|gb|BF066637.1|BF066637
EST:     CTCTGATTGATTACTTGCAAGCTTCATCTGCACTCATGGATCCCAACCAG                         CCCGTGGGTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTC
genomic: CTCTGATTGATTACTTGCAAGCTTCATCTGCACTCATGGATCCCAACCAGgtaactcaac ... tgtggtgcagCCCGTGGGTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTC
EST: gi|19348499|gb|BM893031.1|BM893031
EST:     CTCTGATTGATTACTTGCAAGCTTCATCTGCACTCATGGATCCCAACCAG                         CCCGTGGGTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTC
genomic: CTCTGATTGATTACTTGCAAGCTTCATCTGCACTCATGGATCCCAACCAGgtaactcaac ... tgtggtgcagCCCGTGGGTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTC
EST: gi|192333423|gb|FK023952.1|FK023952
EST:     TCTGATTGATTACTTGCAAGCTTCATCTGCACTCATGGATCCCAACCAG                         CCCGTGGGTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTC
genomic: TCTGATTGATTACTTGCAAGCTTCATCTGCACTCATGGATCCCAACCAGgtaactcaac ... tgtggtgcagCCCGTGGGTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTC
EST: gi|192314172|gb|FK011544.1|FK011544
EST:     CTCTGATTGATTACTTGCAAGCTTCATCTGCACTCATGGATCCCAACCAG                         CCCGTGGGTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTC
genomic: CTCTGATTGATTACTTGCAAGCTTCATCTGCACTCATGGATCCCAACCAGgtaactcaac ... tgtggtgcagCCCGTGGGTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTC
EST: gi|298163961|gb|HO013606.1|HO013606
EST:     CTCTGATTGATTACTTGCAAGCTTCATCTGCACTCATGGATCCCAACCAG                         CCCGTGGGTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTC
genomic: CTCTGATTGATTACTTGCAAGCTTCATCTGCACTCATGGATCCCAACCAGgtaactcaac ... tgtggtgcagCCCGTGGGTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTC
EST: gi|298170569|gb|HO019193.1|HO019193
EST:     CTCTGATTGATTACTTGCAAGCTTCATCTGCACTCATGGATCCCAACCAG                         CCCGTGGGTGAAAACTACGCCAATCCCAGGACTCGCTTCTTTCATGTCCTC
genomic: CTCTGATTGATTACTTGCAAGCTTCATCTGCACTCATGGATCCCAACCAGgtaactcaac ... tgtggtgcagCCCGTGGGTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTC
EST: gi|192326657|gb|FK017314.1|FK017314
EST:     CTCTGATTGATTACTTGCAAGCTTCATCTGCACTCATGGATCCCAACCAG                         CCCGTGGGTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTC
genomic: CTCTGATTGATTACTTGCAAGCTTCATCTGCACTCATGGATCCCAACCAGgtaactcaac ... tgtggtgcagCCCGTGGGTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgattcctttcagatttaggtgattaattagattttcttgtgtgtgtggtgcagCCCGTGGGTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTCTTCAAG
                      gattaat  putative branch site (score: 3)
                       attaattagattttct  TA-rich tract