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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttccagggggggggcctaaggctttgaatttggggttattgttttgttttttatttctcttacttctgccaaactttgactggtttttatttccacccctcctttttctgcagTGGTCAAGCTGAGAAAGAATTTAGAGTGGAAGTTGAAGCTATTGGCCATGTCCGACATAAAAACTTGGTTCGACTTTTGGGTTACTGCATTGAGGGGACT

Basic information

species Glycine max
transcript GLYMA10G28490.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G28490.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv14s0060g00460.t01 (Vitis vinifera), 3'ss of exon 2
gtgagttccagggggggggcctaaggctttgaatttggggttattgttttgttttttatttctcttacttctgccaaactttgactggtttttatttccacccctcctttttctgcagTGGTCAAGCTGAGAAAGAATTTAGAGTGGAAGTTGAAGCTATTGGCCATGTCCGACATAAAAACTTGGTTCGACTTTTGGGTTACTGCATTGAGGGGACT
|||||||  |     |   | |   | ||   | || |  |||| | ||| || ||||||       | ||||   |  | |    |  ||| | ||| |  | |   |||||| ||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||| || || || || |||||||| ||| | || || |||||||| ||||| 
gtgagtttaaacatcgctccgttgtgtttccgactttg--ttat-gatttcttatttatt-------cctctggtgagttcttctagagtttaacttctaaactt--attttcttcagGGGTCAAGCAGAGAAAGAATTTAGAGTTGAAGTTGAAGCTATTGGGCATGTGCGCCACAAGAATTTGGTTCGGCTTCTTGGATATTGCATTGAAGGGACC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttacttctgccaaactttgactggtttttatttccacccctcctttttctgcagTGGTCAAGCTGAGAAAGAATTTAGAGTGGAAGTTGAAGCTATTGGCCATGTCCGACATAAAAACTTGGTTCGACTTTTGGGTTACTGCATTGAGGGGACT
                     ctggtttttatttcca  CT-rich tract
                         tttttattt  TA-rich tract