1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtgttcactttttcaccatcctatccctctatttctctttcaaattatcattctcgatattaattatgttaatgccgattgttttttagGGTTTAACAAAGCTTTTAGCGGACAATGCCCCGAAGTCCATGAAGGAGAACAAATTCGAGAGCTACTTTGGTCGCAAGATCGCTATTGACGCTAGCATGA
species | Glycine max |
transcript | GLYMA10G28200.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTGCGAATTCCTATTCCCACACACATCTCAAATGGGTATTAAG GGTTTAACAAAGCTTTTAGCGGACAATGCCCCGAAGTCCATGAAGGAGAACEST: gi|19346984|gb|BM891864.1|BM891864
genomic: TCTGCGAATTCCTATTCCCACACACATCTCAAATGGGTATTAAGgtgttcactt ... tgttttttagGGTTTAACAAAGCTTTTAGCGGACAATGCCCCGAAGTCCATGAAGGAGAAC
EST: ATTTTCTCTGCGAATTCCTATTCCCACACACATCTCAAATGGGTATTAAG GGTTTAACAAAGCTTTTAGCGGACAATGCCCCGAAGTCCATGAAGGAGAACEST: gi|151407082|gb|EV276897.1|EV276897
genomic: ATTTTCTCTGCGAATTCCTATTCCCACACACATCTCAAATGGGTATTAAGgtgttcactt ... tgttttttagGGTTTAACAAAGCTTTTAGCGGACAATGCCCCGAAGTCCATGAAGGAGAAC
EST: ATTTTCTCTGCGAATTCCTATTCCCACACACATCTCAAATGGGTATTAAG GGTTTAACAAAGCTTTTAGCGGACAATGCCCCGAAGTCCATGAAGGAGAAC
genomic: ATTTTCTCTGCGAATTCCTATTCCCACACACATCTCAAATGGGTATTAAGgtgttcactt ... tgttttttagGGTTTAACAAAGCTTTTAGCGGACAATGCCCCGAAGTCCATGAAGGAGAAC
ctctttcaaattatcattctcgatattaattatgttaatgccgattgttttttagGGTTTAACAAAGCTTTTAGCGGACAATGCCCCGAAGTCCATGAAGGAGAACAAATTCGAGAGCTACTTTGGTCGCAAGATCGCTATTGACGCTAGCATGA
ttgtttttt CT-rich tract
atattaattatgttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgttcactttttcaccatcctatccctctatttctctttcaaattatcattctcgatattaattatgttaatgccgattgttttttagGGTTTAACAAAGCTTTTAGCGGACAATGCCCCGAAGTCCATGAAGGAGAACAAATTCGAGAGCTACTTTGGTCGCAAGATCGCTATTGACGCTAGCATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA