Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgactcactcattcataccacaatcatccttcaccaattgaaattaaacctcatcaattaataactataatttcaatttttatcgtgtgtttctgtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGAGAGTTGGCCGAGGACGGTTACTCCGGCGTGGAAGTTAGGGTTACGCCGA

Basic information

species Glycine max
transcript GLYMA10G26790.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G26790.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os07g41750.1 (Oryza sativa), 3'ss of exon 1
gtgactcactcattcataccacaatcatccttcaccaattgaaattaaacctcatcaattaataactataatttcaatttttatcgtgtgtttctgtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGAGAGTTGGCCGAGGACGGTTACTCCGGCGTGGAAGTTAGGGTTACGCCGA
|| |  | |  ||  | |||  |  ||| |   | || |      |  | ||| |||   |   | |   |  |   ||  |      | ||| |  |  |||||||||| || ||||| ||||||||||| || ||||||||| | |||||  | ||| | || |||||||| ||||||||||| || ||  | || || || |
gtaaggctccgatcgagacc-tatccattccagagcagtc-----tcgatctcgtcacccatggatttcgagat---ttgatgcgcccttttttttggctcgcagTTCGTGGCGGATGGGGTGTTCTTCGCGGAGCTGAACGAGATGCTGACGCGCGAGCTCGCGGAGGACGGCTACTCCGGCGTCGAGGTCCGCGTCACCCCCA

upper sequence: GLYMA10G26790.1 (Glycine max), 3'ss of exon 1
lower sequence: AT3G53870.1 (Arabidopsis thaliana), 3'ss of exon 1
gtgactcactcattcataccacaatcatccttcaccaattgaaattaaacctcatcaattaataactataatttcaatttttatcgtgtgtttctgtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGAGAGTTGGCCGAGGACGGTTACTCCGGCGTGGAAGTTAGGGTTACGCCGA
|||| |       |  |       |  | |||   |||| ||         | |||   |   |||| |   ||   |   | |  || | || ||  |  | |||| ||||| || || ||||||| ||||||| |||| |||||||| ||||||||| | || ||||| |||||||| || || || ||||||||||| || |
gtgaattgtgtgattctgttcattttgttctt--tcaatgga--------tttatcgtattggaactgt---tttggtaactgtgttgagattttgattttgtagTTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGAGAGCTAGCAGAGGATGGTTACTCTGGTGTTGAGGTTAGGGTTACTCCTA

upper sequence: GLYMA10G26790.1 (Glycine max), 3'ss of exon 1
lower sequence: AT2G31610.1 (Arabidopsis thaliana), 3'ss of exon 1
gtgactcactcattcataccacaatcatccttcaccaattgaaattaaacctcatcaattaataactataatttcaatttttatcgtgtgtttctgtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGAGAGTTGGCCGAGGACGGTTACTCCGGCGTGGAAGTTAGGGTTACGCCGA
                 |     ||  | | |      ||   | |  || ||   |  |      |||  | |      | ||| || ||| ||||||  | |||| ||||| ||||| || |||| ||||||| |||| |||||||| ||||||||| | || ||||| |||||||| || || || ||||||||||| || |
-------------gtgaattgtgat--ttcattttttgttttcagtggacttctctagctg-----tatcgtattggaactgatc-tg-gttactgtgtttgtagTTTGTAGCGGATGGTGTATTCTACGCTGAATTGAATGAGGTTCTCACAAGAGAGCTAGCAGAGGATGGTTACTCTGGTGTTGAGGTTAGGGTTACTCCAA

upper sequence: GLYMA10G26790.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv11s0016g01380.t01 (Vitis vinifera), 3'ss of exon 1
gtgactcactcattcataccacaatcatccttcaccaattgaaattaaacctcatcaattaa--taactataatttcaatt-tttatcgtgtgtttctgtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGAGAGTTGGCCGAGGACGGTTACTCCGGCGTGGAAGTTAGGGTTACGCCGA
         ||||   | |    ||  |||||       |||  |   |       | |||   |   || | ||||  |   ||||  ||| ||||| |     |||||||||||||||||||| ||||| ||||| |||||||||||||| || |||||| |||||||||| || ||||| || || || |||||||||||||| |
---gtctgatcatatgttcttttattttcctttgttttctgagctaccaatcggaaagttatgtttgttaaagtttcggtaacttattttgt-tttctct---tacagTTCGTAGCTGATGGAGTTTTCTTTGCTGAGCTGAACGAGGTTCTCACCAGAGAGCTGGCCGAGGATGGCTACTCTGGTGTCGAGGTTAGGGTTACGCCAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14990319|gb|BI315992.1|BI315992
EST:     GCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
genomic: GCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
EST: gi|298187775|gb|HO031732.1|HO031732
EST:     GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGAAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
genomic: GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
EST: gi|213607333|gb|DB967070.1|DB967070
EST:     GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
genomic: GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
EST: gi|21994938|gb|BQ786466.1|BQ786466
EST:     GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
genomic: GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
EST: gi|7041681|gb|AW471522.1|AW471522
EST:     GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
genomic: GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
EST: gi|6566521|gb|AW234164.1|AW234164
EST:     GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
genomic: GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
EST: gi|298193606|gb|HO040254.1|HO040254
EST:     GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
genomic: GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
EST: gi|4313367|gb|AI460486.1|AI460486
EST:     GAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
genomic: GAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
EST: gi|213601492|gb|DB956742.1|DB956742
EST:     GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
genomic: GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
EST: gi|209716015|gb|BW662266.1|BW662266
EST:     GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
genomic: GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
EST: gi|209717515|gb|BW653955.1|BW653955
EST:     GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
genomic: GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
EST: gi|192299860|gb|FG993350.1|FG993350
EST:     GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
genomic: GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
EST: gi|151398090|gb|EV267968.1|EV267968
EST:     GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTCCGCTGAACTGAACGAGGTTCTGACAAGA
genomic: GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
EST: gi|42722910|gb|CK768809.1|CK768809
EST:     GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
genomic: GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
EST: gi|209711928|gb|BW679007.1|BW679007
EST:     GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
genomic: GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
EST: gi|213597996|gb|DB972184.1|DB972184
EST:     GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
genomic: GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
EST: gi|16996025|gb|BM085397.1|BM085397
EST:     GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
genomic: GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
EST: gi|27427516|gb|CA939036.1|CA939036
EST:     GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
genomic: GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
EST: gi|298184418|gb|HO029631.1|HO029631
EST:     GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
genomic: GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
EST: gi|19269579|gb|BM885835.1|BM885835
EST:     GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
genomic: GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
EST: gi|21601379|gb|BQ611710.1|BQ611710
EST:     GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
genomic: GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
EST: gi|120530330|gb|EH258463.1|EH258463
EST:     GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
genomic: GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
EST: gi|213617025|gb|DB959337.1|DB959337
EST:     GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
genomic: GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
EST: gi|27424060|gb|CA935580.1|CA935580
EST:     GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
genomic: GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
EST: gi|12773588|gb|BG238515.1|BG238515
EST:     GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
genomic: GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
EST: gi|151406970|gb|EV276785.1|EV276785
EST:     GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
genomic: GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
EST: gi|24135989|gb|BU926499.1|BU926499
EST:     GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
genomic: GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
EST: gi|192324283|gb|FK018259.1|FK018259
EST:     GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
genomic: GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
EST: gi|6502154|gb|AW203527.1|AW203527
EST:     GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
genomic: GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
EST: gi|209718917|gb|BW669106.1|BW669106
EST:     GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
genomic: GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
EST: gi|298166628|gb|HO010067.1|HO010067
EST:     GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
genomic: GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
EST: gi|16996729|gb|BM086101.1|BM086101
EST:     GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
genomic: GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
EST: gi|213603280|gb|DB970389.1|DB970389
EST:     GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
genomic: GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
EST: gi|10709986|gb|BF009710.1|BF009710
EST:     GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
genomic: GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
EST: gi|298178210|gb|HO023945.1|HO023945
EST:     GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
genomic: GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
EST: gi|209729681|gb|BW669781.1|BW669781
EST:     GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
genomic: GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcatcaattaataactataatttcaatttttatcgtgtgtttctgtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGAGAGTTGGCCGAGGACGGTTACTCCGGCGTGGAAGTTAGGGTTACGCCGA
         taataac  putative branch site (score: 1)
                                        tttctgt  putative PPT
      aattaataactataat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgactcactcattcataccacaatcatccttcaccaattgaaattaaacctcatcaattaataactataatttcaatttttatcgtgtgtttctgtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGAGAGTTGGCCGAGGACGGTTACTCCGGCGTGGAAGTTAGGGTTACGCCGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG