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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcttcttcttcttcttcttctcgttcttctctgatttatatcaattcatatcgaaaactcgaatcacgtgttatttttgttcgttcagGTTGGAACGTACTTCGTGGGACAGTACTATCAGGTGCTTCAGAGCCAACCCGAGTTCGTGCACCAGTTTTACTCTGATGCCAGCACCATGCTCCGTATCG

Basic information

species Glycine max
transcript GLYMA10G26640.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G26640.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv05s0049g01940.t01 (Vitis vinifera), 3'ss of exon 1
gttcttcttcttcttcttcttctcgttcttctctgatttatatcaattcatatcgaaaactcgaatcacgtgttatttttgttcgttcagGTTGGAACGTACTTCGTGGGACAGTACTATCAGGTGCTTCAGAGCCAACCCGAGTTCGTGCACCAGTTTTACTCTGATGCCAGCACCATGCTCCGTATCG
||  ||  | || || || |||   |   |||||   || |     ||  | | ||   ||  |||   | | |  |  ||||   |||||||||  | ||||||||||| |||||||| ||||| ||||||   || || || || || |||||||| |||||||||||||||||  |||| ||  | |
gtaatttctgtttttttttttcctttctctctctctctttttctttttttttttga---ctgaaattttggggttatggtgtt---tcagGTTGGGGCATACTTCGTGGGGCAGTACTACCAGGTTCTTCAGCAACAGCCAGACTTTGTTCACCAGTTCTACTCTGATGCCAGCACTGTGCTTCGCGTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151412400|gb|EV282212.1|EV282212
EST:     CCGTCACCGCAGCTCAG                         GTTGGAACGTACTTCGTGGGACAGTACTATCAGGTGCTTCAGAGCCAACCC
genomic: CCGTCACCGCAGCTCAGgttcttcttc ... gttcgttcagGTTGGAACGTACTTCGTGGGACAGTACTATCAGGTGCTTCAGAGCCAACCC
EST: gi|151406738|gb|EV276553.1|EV276553
EST:     CATTTTCTTCAATGGCCACGCCCTTTCCCATTCCCGTCACCGCAGCTCAG                         GTTGGAACGTACTTCGTGGGACAGTACTATCAGGTGCTTCAGAGCCAACCC
genomic: CATTTTCTTCAATGGCCACGCCCTTTCCCATTCCCGTCACCGCAGCTCAGgttcttcttc ... gttcgttcagGTTGGAACGTACTTCGTGGGACAGTACTATCAGGTGCTTCAGAGCCAACCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttatatcaattcatatcgaaaactcgaatcacgtgttatttttgttcgttcagGTTGGAACGTACTTCGTGGGACAGTACTATCAGGTGCTTCAGAGCCAACCCGAGTTCGTGCACCAGTTTTACTCTGATGCCAGCACCATGCTCCGTATCG
 ctctgat  putative branch site (score: 4)
                                        tttttgttc  putative PPT
                                     ttatttttgtt  TA-rich tract