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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttactagttgatttttgaaattgttacacaatttgggcagcaaattattgaagctgctttatgattgacagtgttatccttttccatgacttaacaacagGTTTGAGTCCTCATTACCCGCCTCTCTCTGGAAACCAGCAAAACCACCTT

Basic information

species Glycine max
transcript GLYMA10G24350.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27425309|gb|CA936829.1|CA936829
EST:     AGAAACCAAATCG                         GTTTGAGTCCTCATTACCCGCCTCTCTCTGGAAACCAGCAAAACCACCTT
genomic: AGAAACCAAATCGgtaagattct ... ttaacaacagGTTTGAGTCCTCATTACCCGCCTCTCTCTGGAAACCAGCAAAACCACCTT
EST: gi|7926083|gb|AW832109.1|AW832109
EST:     TCTCTTTCTGTTCTTCTCAAAGACGCACGCAACGTTCAGAAACCAAATCG                         GTTTGAGTCCTCATTACCCGCCTCTCTCTGGAAACCAGCAAAACCACCTT
genomic: TCTCTTTCTGTTCTTCTCAAAGACGCACGCAACGTTCAGAAACCAAATCGgtaagattct ... ttaacaacagGTTTGAGTCCTCATTACCCGCCTCTCTCTGGAAACCAGCAAAACCACCTT
EST: gi|192320515|gb|FK011925.1|FK011925
EST:     GTTCTTCTCAAAGACGCACGCAACGTTCAGAAACCAAATCG                         GTTTGAGTCCTCATTACCCGCCTCTCTCTGGAAACCAGCAAAACCACCTT
genomic: GTTCTTCTCAAAGACGCACGCAACGTTCAGAAACCAAATCGgtaagattct ... ttaacaacagGTTTGAGTCCTCATTACCCGCCTCTCTCTGGAAACCAGCAAAACCACCTT
EST: gi|13479182|gb|BG508525.1|BG508525
EST:     CAAAGACGCACGCAACGTTCAGAAACCAAATCG                         GTTTGAGTCCTCATTACCCGCCTCTCTCTGGAAACCAGCAAAACCACCTT
genomic: CAAAGACGCACGCAACGTTCAGAAACCAAATCGgtaagattct ... ttaacaacagGTTTGAGTCCTCATTACCCGCCTCTCTCTGGAAACCAGCAAAACCACCTT
EST: gi|213618238|gb|DB973008.1|DB973008
EST:     AAAGACGCACGCAACGTTCAGAAACCAAATCG                         GTTTGAGTCCTCATTACCCGCCTCTCTCTGGAAACCAGCAAAACCACCTT
genomic: AAAGACGCACGCAACGTTCAGAAACCAAATCGgtaagattct ... ttaacaacagGTTTGAGTCCTCATTACCCGCCTCTCTCTGGAAACCAGCAAAACCACCTT
EST: gi|13791609|gb|BG654200.1|BG654200
EST:     TCTCTTTCTGTTCTTCTCAAAGACGCACGCAACGTTCAGAAACCAAATCG                         GTTTGAGTCCTCATTACCCGCCTCTCTCTGGAAACCAGCAAAACCACCTT
genomic: TCTCTTTCTGTTCTTCTCAAAGACGCACGCAACGTTCAGAAACCAAATCGgtaagattct ... ttaacaacagGTTTGAGTCCTCATTACCCGCCTCTCTCTGGAAACCAGCAAAACCACCTT
EST: gi|192308052|gb|FG999035.1|FG999035
EST:     AAAGACGCACGCAACGTTCAGAAACCAAATCT                         GTTTGAGTCCTCATTACCCGCCTCTCTCTGGAAACCAGCAAAACCACCTT
genomic: AAAGACGCACGCAACGTTCAGAAACCAAATCGgtaagattct ... ttaacaacagGTTTGAGTCCTCATTACCCGCCTCTCTCTGGAAACCAGCAAAACCACCTT
EST: gi|213595893|gb|DB966252.1|DB966252
EST:     CGCACGCAACGTTCAGAAACCAAATCG                         GTTTGAGTCCTCATTACCCGCCTCTCTCTGGAAACCAGCAAAACCACCTT
genomic: CGCACGCAACGTTCAGAAACCAAATCGgtaagattct ... ttaacaacagGTTTGAGTCCTCATTACCCGCCTCTCTCTGGAAACCAGCAAAACCACCTT
EST: gi|10232355|gb|BE801243.1|BE801243
EST:     TCTCTTTCTGTTCTTCTCAAAGACGCACGCAACGTTCAGAAACCAAATCG                         GTTTGAGTCCTCATTACCCGCCTCTCTCTGGAAACCAGCAAAACCACCTT
genomic: TCTCTTTCTGTTCTTCTCAAAGACGCACGCAACGTTCAGAAACCAAATCGgtaagattct ... ttaacaacagGTTTGAGTCCTCATTACCCGCCTCTCTCTGGAAACCAGCAAAACCACCTT
EST: gi|27446299|gb|CA953422.1|CA953422
EST:     CTGTTCTTCTCAAAGACGCACGCAACGTTCAGAAACCAAATCG                         GTTTGAGTCCTCATTACCCGCCTCTCTCTGGAAACCAGCAAAACCACCTT
genomic: CTGTTCTTCTCAAAGACGCACGCAACGTTCAGAAACCAAATCGgtaagattct ... ttaacaacagGTTTGAGTCCTCATTACCCGCCTCTCTCTGGAAACCAGCAAAACCACCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattgaagctgctttatgattgacagtgttatccttttccatgacttaacaacagGTTTGAGTCCTCATTACCCGCCTCTCTCTGGAAACCAGCAAAACCACCTT
                                           acttaac  putative branch site (score: 3)
            tttatgatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttactagttgatttttgaaattgttacacaatttgggcagcaaattattgaagctgctttatgattgacagtgttatccttttccatgacttaacaacagGTTTGAGTCCTCATTACCCGCCTCTCTCTGGAAACCAGCAAAACCACCTT

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