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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttacccagtagcatataaactttgtaaggtcttatttttttataaggaaatagctcatgtataaatttttttgttcagGCTGTGTACCATATGCCCACGACTGAAAATGATATGCCATCAGTGAGCATCCCTCTGGCATTACAAAGTTTGTTTTACAAATTGCAGTATAGTGACACTA

Basic information

species Glycine max
transcript GLYMA10G23680.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G23680.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os11g36470.1 (Oryza sativa), 3'ss of exon 1
-------gttacccagtagcatataaactttgtaaggtcttatttttttataaggaaatagctcatgtataaatttttttgttcagGCTGTGTACCATATGCCCACGACTGAAAATGATATGCCATCAGTGAGCATCCCTCTGGCATTACAAAGTTTGTTTTACAAATTGCAGTATAGTGACACTA
        | |  ||  |  ||  | |   |   ||    | | |||  | ||  || |  || |  |    ||| ||||   ||||||||||| |||||||| || || ||||||||||||||||| | ||| || ||  ||||||| || ||  | || |||||  | ||||||||||||| ||
gtgtgagatcatgcatcataattcagagcattctagactat-tgtttccagaactaattgactaacttc---attattttacccagGCTGTGTATCATATGCCAACCACCGAAAATGATATGCCATCTGGGAGTATTCCGTTGGCATTGCAGAGCCTTTTCTACAAGCTCCAGTATAGTGACAATA

upper sequence: GLYMA10G23680.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv13s0073g00610.t01 (Vitis vinifera), 3'ss of exon 5
--------gttacccagtagcatataaactttgtaaggtcttatttttttataaggaaatagctcatgtataaatttttttgttcagGCTGTGTACCATATGCCCACGACTGAAAATGATATGCCATCAGTGAGCATCCCTCTGGCATTACAAAGTTTGTTTTACAAATTGCAGTATAGTGACACTA
         ||  |   |  | |       ||||    |     || |||  ||| ||  |   ||| |   || | | |  ||||||||||||| |||||||| || ||||| |||||||||||||||| ||| ||||||||||| || || ||||| || || ||  | || || ||||||||||
gttgggaaattctcttttttcctcctttacttgtttcattgatattatttgcaagaaagcactacatttg-gaactgtgtatttcagGCTGTGTATCATATGCCGACAACTGAGAATGATATGCCATCAGGGAGTATCCCTCTGGCTTTGCAGAGTTTATTCTATAAGCTCCAATACAGTGACACTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaaggtcttatttttttataaggaaatagctcatgtataaatttttttgttcagGCTGTGTACCATATGCCCACGACTGAAAATGATATGCCATCAGTGAGCATCCCTCTGGCATTACAAAGTTTGTTTTACAAATTGCAGTATAGTGACACTA
                                          tttttttgttc  CT-rich tract
      tcttatttttttataa  TA-rich tract