1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgtttatctaatcggtgttctattcttggtgctacatgacatggtgatgtatgaacaaggatgtgttgaccagtgacccattgcttgttattgctcttagGTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATACTACAAGTTGGCATTGAGGCTGCATCCTGATAAGAACCCTGGTGATGAG
species | Glycine max |
transcript | GLYMA10G12350.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCTTCGATAAAAACGAAAACTCTCTCTATCAG GTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATACEST: gi|151396151|gb|EV266028.1|EV266028
genomic: CCCTTCGATAAAAACGAAAACTCTCTCTATCAGgttatcttaa ... ttgctcttagGTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATAC
EST: TCGAATCCGATACCAACCCCTTCGATAAAAACGAAAACTCTCTCTATCAG GTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATACEST: gi|193486269|gb|FK449543.1|FK449543
genomic: TCGAATCCGATACCAACCCCTTCGATAAAAACGAAAACTCTCTCTATCAGgttatcttaa ... ttgctcttagGTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATAC
EST: TCGAATCCGATACCAACCCCTTCGATAAAAACGAAAACTCTCTCTATCAG GTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATACEST: gi|41145363|gb|CK605574.1|CK605574
genomic: TCGAATCCGATACCAACCCCTTCGATAAAAACGAAAACTCTCTCTATCAGgttatcttaa ... ttgctcttagGTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATAC
EST: TCGAATCCGATACCAACCCCTTCGATAAAAACGAAAACTCTCTCTATCAG GTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATACEST: gi|208257299|gb|GE056714.1|GE056714
genomic: TCGAATCCGATACCAACCCCTTCGATAAAAACGAAAACTCTCTCTATCAGgttatcttaa ... ttgctcttagGTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATAC
EST: TCGAATCCGATACCAACCCCTTCGATAAAAACGAAAACTCTCTCTATCAG GTTCTTGGTGTGGAGAAAACAGCATCTCAACAGEST: gi|298194691|gb|HO043163.1|HO043163
genomic: TCGAATCCGATACCAACCCCTTCGATAAAAACGAAAACTCTCTCTATCAGgttatcttaa ... ttgctcttagGTTCTTGGTGTGGAGAAAACAGCATCTCAACAG
EST: TCGAATCCGATACCAACCCCTTCGATAAAAACGAAAACTCTCTCTATCAG GTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATACEST: gi|192323158|gb|FK017384.1|FK017384
genomic: TCGAATCCGATACCAACCCCTTCGATAAAAACGAAAACTCTCTCTATCAGgttatcttaa ... ttgctcttagGTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATAC
EST: TCGAATCCGATACCAACCCCTTCGATAAAAACGAAAACTCTCTCTATCAG GTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATACEST: gi|151402844|gb|EV272657.1|EV272657
genomic: TCGAATCCGATACCAACCCCTTCGATAAAAACGAAAACTCTCTCTATCAGgttatcttaa ... ttgctcttagGTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATAC
EST: TCGAATCCGATACCAACCCCTTCGATAAAAACGAAAACTCTCTCTATCAG GTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATACEST: gi|151407863|gb|EV277678.1|EV277678
genomic: TCGAATCCGATACCAACCCCTTCGATAAAAACGAAAACTCTCTCTATCAGgttatcttaa ... ttgctcttagGTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATAC
EST: TCGAATCCGATACCAACCCCTTCGATAAAAACGAAAACTCTCTCTATCAG GTTCTTGGTGTGGAGAAAACAGCATCCCAACAGGAAATAAAGAAGGCATACEST: gi|193579583|gb|FK536352.1|FK536352
genomic: TCGAATCCGATACCAACCCCTTCGATAAAAACGAAAACTCTCTCTATCAGgttatcttaa ... ttgctcttagGTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATAC
EST: TCGAATCCGATACCAACCCCTTCGATAAAAACGAAAACTCTCTCTATCAG GTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATACEST: gi|207703247|gb|GD685305.1|GD685305
genomic: TCGAATCCGATACCAACCCCTTCGATAAAAACGAAAACTCTCTCTATCAGgttatcttaa ... ttgctcttagGTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATAC
EST: TCGAATCCGATACCAACCCCTTCGATAAAAACGAAAACTCTCTCTATCAG GTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATACEST: gi|207729869|gb|GD706421.1|GD706421
genomic: TCGAATCCGATACCAACCCCTTCGATAAAAACGAAAACTCTCTCTATCAGgttatcttaa ... ttgctcttagGTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATAC
EST: TCGAATCCGATACCAACCCCTTCGATAAAAACGAAAACTCTCTCTATCAG GTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATAC
genomic: TCGAATCCGATACCAACCCCTTCGATAAAAACGAAAACTCTCTCTATCAGgttatcttaa ... ttgctcttagGTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATAC
gatgtatgaacaaggatgtgttgaccagtgacccattgcttgttattgctcttagGTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATACTACAAGTTGGCATTGAGGCTGCATCCTGATAAGAACCCTGGTGATGAG
tgttgac putative branch site (score: 3)
ttgctctt putative PPT
ttgttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtttatctaatcggtgttctattcttggtgctacatgacatggtgatgtatgaacaaggatgtgttgaccagtgacccattgcttgttattgctcttagGTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATACTACAAGTTGGCATTGAGGCTGCATCCTGATAAGAACCCTGGTGATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC