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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggaagcatcaatgacgatactgttcaaagtcgttagcatctgcatctgctctcattttttttaggattgaatacaaaaatacgatttttactattttcagGATGTCTGTGGTGGAGACAGTTGTTTTCTAATAAACAATCACAACAAGTCAAGCCAGAATGAGCCTGAGATTAT

Basic information

species Glycine max
transcript GLYMA10G11720.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209718689|gb|BW674779.1|BW674779
EST:     GGCTGCTTCCTATCCATTTCTCCAGTTTTCAGTTCAAAATAGTTTCCAAG                         GATGTCTGTGGTGGAGACAGTTGTTTTCTAATAAACAATCACAACAAGTCA
genomic: GGCTGCTTCCTATCCATTTCTCCAGTTTTCAGTTCAAAATAGTTTCCAAGgtctttctcc ... ctattttcagGATGTCTGTGGTGGAGACAGTTGTTTTCTAATAAACAATCACAACAAGTCA
EST: gi|209728536|gb|BW663536.1|BW663536
EST:     GGCTGCTTCCTATCCATTTCTCCAGTTTTCAGTTCAAAATAGTTTCCAAG                         GATGTCTGTGGTGGAGACAGTTGTTTTCTAATAAACAATCACAACAAGTCA
genomic: GGCTGCTTCCTATCCATTTCTCCAGTTTTCAGTTCAAAATAGTTTCCAAGgtctttctcc ... ctattttcagGATGTCTGTGGTGGAGACAGTTGTTTTCTAATAAACAATCACAACAAGTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgctctcattttttttaggattgaatacaaaaatacgatttttactattttcagGATGTCTGTGGTGGAGACAGTTGTTTTCTAATAAACAATCACAACAAGTCAAGCCAGAATGAGCCTGAGATTAT
                                       tttttactattttc  CT-rich tract
        attttttttaggattg  TA-rich tract