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...tgggggagtttacaagttttgggtggaagtctgtatatgaagctggatattgtaatatttatgggtgttgctgatgggattgattggctgtggttgaaagGTGTTCTCCGACAACATGGGGAAGAAGTCTGAGCCTGTGATAACAAAATGCAAAGTTGGTGAGAACTGGACTAAGGTGACCTTCAAGCCTGACTTGGAAA
species | Glycine max |
transcript | GLYMA10G11610.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGTTCGTCATCGAAACTGCCGATGGAAAGCGCCAGAAGAAGTATAAACAG GTGTTCTCCGACAACATGGGGAAGAAGTCTGAGCCTGTGATAACAAAATGCEST: gi|208285030|gb|GE086964.1|GE086964
genomic: AGTTCGTCATCGAAACTGCCGATGGAAAGCGCCAGAAGAAGTATAAACAGgtcgtcattt ... tggttgaaagGTGTTCTCCGACAACATGGGGAAGAAGTCTGAGCCTGTGATAACAAAATGC
EST: AGTTCGTCATCGAAACTGCCGATGGAAAGCGCCAGAAGAAGTATAAACAG GTGTTCTCCGACAACATGGGGAAGAAGTCTGAGCCTGTGATAACAAAATGCEST: gi|208134510|gb|GD930917.1|GD930917
genomic: AGTTCGTCATCGAAACTGCCGATGGAAAGCGCCAGAAGAAGTATAAACAGgtcgtcattt ... tggttgaaagGTGTTCTCCGACAACATGGGGAAGAAGTCTGAGCCTGTGATAACAAAATGC
EST: GTTCGTCATACGAAACTGCCGATGGAAAGCGCCAGAAGAAGTATAAACAG GTGTTCTCCGACAACATGGGGAAGAAGTCTGAGCCTGTGATAAACAAAATGEST: gi|207842339|gb|GD814177.1|GD814177
genomic: GTTCGTCAT-CGAAACTGCCGATGGAAAGCGCCAGAAGAAGTATAAACAGgtcgtcattt ... tggttgaaagGTGTTCTCCGACAACATGGGGAAGAAGTCTGAGCCTGTGATAA-CAAAATG
EST: AAGTATAAACAG GTGTTCTCCGACAACATGGGGAAGAAGTCTGAGCCTGTGATAACAAAATGC
genomic: AAGTATAAACAGgtcgtcattt ... tggttgaaagGTGTTCTCCGACAACATGGGGAAGAAGTCTGAGCCTGTGATAACAAAATGC
gatattgtaatatttatgggtgttgctgatgggattgattggctgtggttgaaagGTGTTCTCCGACAACATGGGGAAGAAGTCTGAGCCTGTGATAACAAAATGCAAAGTTGGTGAGAACTGGACTAAGGTGACCTTCAAGCCTGACTTGGAAA
tgtaatatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgggggagtttacaagttttgggtggaagtctgtatatgaagctggatattgtaatatttatgggtgttgctgatgggattgattggctgtggttgaaagGTGTTCTCCGACAACATGGGGAAGAAGTCTGAGCCTGTGATAACAAAATGCAAAGTTGGTGAGAACTGGACTAAGGTGACCTTCAAGCCTGACTTGGAAA
-gggggag
- - - - - - - - - - gggtgga
- - - - - - - - - - - - - - gtctgta
- - - - - - - - - - - - - - - - - - - gaagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggtgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttggctg