Sequence
atgc intronic sequence ATGC exonic sequence...gaaggttcttatcaaattattgggtcattttgtccacttggctaaccatataaaagtatcaataagaattgtaatgtggggtttcattttgttgtggtagTTGATTGTGCTTTACGTGGTTTTCAAGCTTGACGAGAGTTACATGCCGAGCAAAGTTTCCATCCTTGCCCGTGATGGTTTTCACAACTTGAAG
Basic information
species | Glycine max |
transcript | GLYMA10G09250.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G09250.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G054247_T04 (Zea mays), 3'ss of exon 2
gaaggttcttatcaaattattgggtcattttgtccacttggctaaccatataaaagtatcaataagaattgtaatgtggggtttcattttgttgtggtagTTGATTGTGCTTTACGTGGTTTTCAAGCTTGACGAGAGTTACATGCCGAGCAAAGTTTCCATCCTTGCCCGTGATGGTTTTCACAACTTGAAG-------
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----gtgcctgcttcagtagag----atgctactcctttgccttgtgattcgatggttttgagactaattg---------gttctatgttgt-gcggtagCTCGTTGTGCTCTACGTGGATTTCAAGCTCGACGAGAGTTACACGCCGAGCAAGATCTCCATCCGGGCCGGGGATGGCTTCCACAACCTAAAGGTACGCT
upper sequence: GLYMA10G09250.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G054247_T03 (Zea mays), 3'ss of exon 2
gaaggttcttatcaaattattgggtcattttgtccacttggctaaccatataaaagtatcaataagaattgtaatgtggggtttcattttgttgtggtagTTGATTGTGCTTTACGTGGTTTTCAAGCTTGACGAGAGTTACATGCCGAGCAAAGTTTCCATCCTTGCCCGTGATGGTTTTCACAACTTGAAG
|| | | | || | || | | ||| || || | || | | | ||||| ||| || |||| | ||||| | ||||||| ||||||| ||||||||| ||||||||||||| ||||||||| | ||||||| ||| | ||||| || |||||| | |||
----gtgcctgcttcagtagag----atgctactcctttgccttgtgattcgatggttttgagactaattg---------gttctatgttgt-gcggtagCTCGTTGTGCTCTACGTGGATTTCAAGCTCGACGAGAGTTACACGCCGAGCAAGATCTCCATCCGGGCCGGGGATGGCTTCCACAACCTAAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ccatataaaagtatcaataagaattgtaatgtggggtttcattttgttgtggtagTTGATTGTGCTTTACGTGGTTTTCAAGCTTGACGAGAGTTACATGCCGAGCAAAGTTTCCATCCTTGCCCGTGATGGTTTTCACAACTTGAAG
ttttgtt CT-rich tract
taaaagtatcaataa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaaggttcttatcaaattattgggtcattttgtccacttggctaaccatataaaagtatcaataagaattgtaatgtggggtttcattttgttgtggtagTTGATTGTGCTTTACGTGGTTTTCAAGCTTGACGAGAGTTACATGCCGAGCAAAGTTTCCATCCTTGCCCGTGATGGTTTTCACAACTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG