1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atttggagtattttatgttaaatcacattaaatattaagtatttatctctttcctttacctgtcatgtgaatattgagcattcccctattctatgtatagATATGGAGTGGCAACACCCAGCACTGGAGGTCCAGCAAATAGCATGAAGTCCAAAGCATTGTCAAACAGTAGATGGCGGAGGGTAGTCCTCAAAATTAGT
species | Glycine max |
transcript | GLYMA10G07490.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCTCCCCGGCAATCGAAAAG ATATGGAGTGGCAACACCCAGCACTGGAGGTCCAGCAAATAGCATGAAGTCEST: gi|208164497|gb|GD961953.1|GD961953
genomic: TTCTCCCCGGCAATCGAAAAGgtattcggca ... ctatgtatagATATGGAGTGGCAACACCCAGCACTGGAGGTCCAGCAAATAGCATGAAGTC
EST: GCCGGAACTTCTCCCCGGCAATCGAAAAG ATATGGAGTGGCAACACCCAGCACTGGAGGTCCAGCAAATAGCATGAAGTC
genomic: GCCGGAACTTCTCCCCGGCAATCGAAAAGgtattcggca ... ctatgtatagATATGGAGTGGCAACACCCAGCACTGGAGGTCCAGCAAATAGCATGAAGTC
tctctttcctttacctgtcatgtgaatattgagcattcccctattctatgtatagATATGGAGTGGCAACACCCAGCACTGGAGGTCCAGCAAATAGCATGAAGTCCAAAGCATTGTCAAACAGTAGATGGCGGAGGGTAGTCCTCAAAATTAGT
cattcccctattct CT-rich tract
tgaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttggagtattttatgttaaatcacattaaatattaagtatttatctctttcctttacctgtcatgtgaatattgagcattcccctattctatgtatagATATGGAGTGGCAACACCCAGCACTGGAGGTCCAGCAAATAGCATGAAGTCCAAAGCATTGTCAAACAGTAGATGGCGGAGGGTAGTCCTCAAAATTAGT
- - - - - - - - - - aatcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcccct