1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaattgtcactacccctcttttttctttttaatgctgcagtcgtagaattgaaactcaaagtctcaaactttgtagGAATTGGCGTGGCTGAGGCTGCAAAAGTTGGTGTGAACAAGCCAGAGTTGCTCCCCAAGGAGTTTAGTACTGTCATTGATGTTGCTGGGTTCCTATCCGA
species | Glycine max |
transcript | GLYMA10G06430.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTTCATTTTGCTCTCTCTGGGGCACTCTCACTTGGGTTATTATTCGGAG GAATTGGCGTGGCTGAGGCTGCAAAAGTTGGTGTGAACAAGCCAGAGCTGCEST: gi|298187545|gb|HO034694.1|HO034694
genomic: TCTTCATTTTGCTCTCTCTGGGGCACTCTCACTTGGGTTATTATTCGGAGgtaattgtca ... aactttgtagGAATTGGCGTGGCTGAGGCTGCAAAAGTTGGTGTGAACAAGCCAGAGTTGC
EST: TCTTCATTTTGCTCTCTCTGGGGCACTCTCACTTGGGTTTTTATTCGGAG GAATTGGCGTGGCTGAGGCTGCAAAAGTTGGTGTGAACAAGCCAGAGTTGCEST: gi|14126593|gb|BG791031.1|BG791031
genomic: TCTTCATTTTGCTCTCTCTGGGGCACTCTCACTTGGGTTATTATTCGGAGgtaattgtca ... aactttgtagGAATTGGCGTGGCTGAGGCTGCAAAAGTTGGTGTGAACAAGCCAGAGTTGC
EST: TCTTCATTTTGCTCTCTCTGGGGCACTCTCACTTGGGTTATTATTCGGAG GAATTGGCGTGGCTGAGGCTGCAAAAGTTGGTGTGAACAAGCCAGAGTTGCEST: gi|151402284|gb|EV272097.1|EV272097
genomic: TCTTCATTTTGCTCTCTCTGGGGCACTCTCACTTGGGTTATTATTCGGAGgtaattgtca ... aactttgtagGAATTGGCGTGGCTGAGGCTGCAAAAGTTGGTGTGAACAAGCCAGAGTTGC
EST: TCTTCATTTTGCTCTCTCTGGGGCACTCTCACTTGGGTTATTATTCGGAG GAATTGGCGTGGCTGAGGCTGCAAAAGTTGGTGTGAACAAGCCAGAGTTGC
genomic: TCTTCATTTTGCTCTCTCTGGGGCACTCTCACTTGGGTTATTATTCGGAGgtaattgtca ... aactttgtagGAATTGGCGTGGCTGAGGCTGCAAAAGTTGGTGTGAACAAGCCAGAGTTGC
tttctttttaatgctgcagtcgtagaattgaaactcaaagtctcaaactttgtagGAATTGGCGTGGCTGAGGCTGCAAAAGTTGGTGTGAACAAGCCAGAGTTGCTCCCCAAGGAGTTTAGTACTGTCATTGATGTTGCTGGGTTCCTATCCGA
ttttaat putative branch site (score: 3)
ttttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattgtcactacccctcttttttctttttaatgctgcagtcgtagaattgaaactcaaagtctcaaactttgtagGAATTGGCGTGGCTGAGGCTGCAAAAGTTGGTGTGAACAAGCCAGAGTTGCTCCCCAAGGAGTTTAGTACTGTCATTGATGTTGCTGGGTTCCTATCCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG