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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcaacatctcactgttttttttttttcttcttttatttttattttgccctttctgtcttatctctctagggttttctatttccccaattttatcatatcatgttttttcttctccccgttcccctcctccgattagGGTTCCGGCGACCATGTCCGATGCTCCGGCGAGTCCATGCGGCGGCGGCGGCGGAGGCAGCCACGAGAGCGGCGAGCACAGTCCCCGCTCCAATTTCCGC

Basic information

species Glycine max
transcript GLYMA10G05610.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298187763|gb|HO031720.1|HO031720
EST:     TCCAGCGTTCATTTTTTCTCGCGCCCAAATACAAAATCACATCACAACAG                         GGTTCCGGCGACCATGTCCGATGCTCCGGCGAGTCCATGCGGCGGCGGCGG
genomic: TCCAGCGTTCATTTTTTCTCGCGCCCAAATACAAAATCACATCACAACAGgtttcaacat ... ctccgattagGGTTCCGGCGACCATGTCCGATGCTCCGGCGAGTCCATGCGGCGGCGGCGG
EST: gi|298196414|gb|HO041157.1|HO041157
EST:     TCCAGCGTTCATTTTTTCTCGCGCCCAAATACAAAATCACATCACAACAG                         GGTTCCGGCGACCATGTCCGATGCTCCGGCGAGTCCATGCGGCGGCGGCGG
genomic: TCCAGCGTTCATTTTTTCTCGCGCCCAAATACAAAATCACATCACAACAGgtttcaacat ... ctccgattagGGTTCCGGCGACCATGTCCGATGCTCCGGCGAGTCCATGCGGCGGCGGCGG
EST: gi|298197939|gb|HO039478.1|HO039478
EST:     TCCAGCGTTCATTTTTTCTCGCGCCCAAATACAAAATCACATCACAACAG                         GGTTCCGGCGACCATGTCCGATGCTCCGGCGAGTCCATGCGGCGGCGGCGG
genomic: TCCAGCGTTCATTTTTTCTCGCGCCCAAATACAAAATCACATCACAACAGgtttcaacat ... ctccgattagGGTTCCGGCGACCATGTCCGATGCTCCGGCGAGTCCATGCGGCGGCGGCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccccaattttatcatatcatgttttttcttctccccgttcccctcctccgattagGGTTCCGGCGACCATGTCCGATGCTCCGGCGAGTCCATGCGGCGGCGGCGGCGGAGGCAGCCACGAGAGCGGCGAGCACAGTCCCCGCTCCAATTTCCGC
           tcatatcatgtttttt  CT-rich tract
     attttatcatatcatg  TA-rich tract