1 5' 3' | 2 5' 3' | 3 5' 3' |
...gtggcctaattgttgtctccttgttgggatagaatgtttgttttatgtccatcagaccaattcttccactttttgatttgtaatttttggtttattacagCTATCAGAAATTGTAAAACAAGGTCAATTGGTGTCAGATGAAATTATTATACGTTTATTGTCAAAGAGACTTGTTGCTGGGGAAGCTAAAGGCGATCTGG
species | Glycine max |
transcript | GLYMA10G05530.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGATCTCGTTCGCGACGAACTCGCCTCCTCTGACCCCCTTTCTTCCCAG CTATCAGAAATTGTAAAACAAGGTCAATTGGTGTCAGATGAAATTATTATAEST: gi|298176400|gb|HO026635.1|HO026635
genomic: GCGATCTCGTTCGCGACGAACTCGCCTCCTCTGACCCCCTTTCTTCCCAGgttctcttct ... tttattacagCTATCAGAAATTGTAAAACAAGGTCAATTGGTGTCAGATGAAATTATTATA
EST: GCGATCTCGTTCGCGACGAACTCGCCTCCTCTGACCCCCTTTCTTCCCAG CTATCAGAAATTGTAAAACAAGGTCAATTGGTGTCAGATGAAATTATTATAEST: gi|298188072|gb|HO032029.1|HO032029
genomic: GCGATCTCGTTCGCGACGAACTCGCCTCCTCTGACCCCCTTTCTTCCCAGgttctcttct ... tttattacagCTATCAGAAATTGTAAAACAAGGTCAATTGGTGTCAGATGAAATTATTATA
EST: GCGATCTCGTTCGCGACGAACTCGCCTCCTCTGACCCCCTTTCTTCCCAG CTATCAGAAATTGTAAAACAAGGTCAATTGGTGTCAGATGAAATTATTATA
genomic: GCGATCTCGTTCGCGACGAACTCGCCTCCTCTGACCCCCTTTCTTCCCAGgttctcttct ... tttattacagCTATCAGAAATTGTAAAACAAGGTCAATTGGTGTCAGATGAAATTATTATA
tgtccatcagaccaattcttccactttttgatttgtaatttttggtttattacagCTATCAGAAATTGTAAAACAAGGTCAATTGGTGTCAGATGAAATTATTATACGTTTATTGTCAAAGAGACTTGTTGCTGGGGAAGCTAAAGGCGATCTGG
ttttgat putative branch site (score: 4)
tttttgatttgtaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggcctaattgttgtctccttgttgggatagaatgtttgttttatgtccatcagaccaattcttccactttttgatttgtaatttttggtttattacagCTATCAGAAATTGTAAAACAAGGTCAATTGGTGTCAGATGAAATTATTATACGTTTATTGTCAAAGAGACTTGTTGCTGGGGAAGCTAAAGGCGATCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - tgttgtc
- - - - - - - - - - -tgttggg
- - - - - - - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - -tccatca