1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ggtcaaatttggatatattggttttttttttttaaatggtgggtaaattatgtgtaaatgcaacgatggatctaatggaaaacattgttcattatttcagAGTGTAGAAATGGCTCCACCAATTGAGACCCCAACCAAGGTTTCCAGCTATCAGCACTCCCCAAACCCTCGTCTTAACGAGAGGATTCTTTCATCCATTT
species | Glycine max |
transcript | GLYMA10G05130.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGTGTTTCTCTCTCCAACCTTCGTTTCACCACACTTCCATCACTTGTCG AGTGTAGAAATGGCTCCACCAATTGAGACCCCAACCAAGGTTTCCAGCTATEST: gi|193704216|gb|FK647480.1|FK647480
genomic: CTGTGTTTCTCTCTCCAACCTTCGTTTCACCACACTTCCATCACTTGTCGgtgagttccc ... attatttcagAGTGTAGAAATGGCTCCACCAATTGAGACCCCAACCAAGGTTTCCAGCTAT
EST: CTGNGTTTCTCTCTCCAACCTTCGTTTCACCACACTTCCATCACTTGTCG AGTGTAGAAATGGCTCCACCAATTGAGACCCCAACCAAGGTTTCCAGCTATEST: gi|192331411|gb|FK022716.1|FK022716
genomic: CTGTGTTTCTCTCTCCAACCTTCGTTTCACCACACTTCCATCACTTGTCGgtgagttccc ... attatttcagAGTGTAGAAATGGCTCCACCAATTGAGACCCCAACCAAGGTTTCCAGCTAT
EST: CTGTGTTTCTCTCTCCAACCTTCGTTTCACCACACTTCCATCACTTGTCG AGTGTAGAAATGGCTCCACCAATTGAGACCCCAACCAAGGTTTCCAGCTAT
genomic: CTGTGTTTCTCTCTCCAACCTTCGTTTCACCACACTTCCATCACTTGTCGgtgagttccc ... attatttcagAGTGTAGAAATGGCTCCACCAATTGAGACCCCAACCAAGGTTTCCAGCTAT
aattatgtgtaaatgcaacgatggatctaatggaaaacattgttcattatttcagAGTGTAGAAATGGCTCCACCAATTGAGACCCCAACCAAGGTTTCCAGCTATCAGCACTCCCCAAACCCTCGTCTTAACGAGAGGATTCTTTCATCCATTT
atctaat putative branch site (score: 3)
ttatttc putative PPT
attgttcattattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtcaaatttggatatattggttttttttttttaaatggtgggtaaattatgtgtaaatgcaacgatggatctaatggaaaacattgttcattatttcagAGTGTAGAAATGGCTCCACCAATTGAGACCCCAACCAAGGTTTCCAGCTATCAGCACTCCCCAAACCCTCGTCTTAACGAGAGGATTCTTTCATCCATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - tggtggg
- - - - - - - - - - - - - - - - - - - - - - - - tatgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctaatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaacatt