1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tttgtgaaatcgtgtatgtttatttgtattgaagctctttgattgaatgattgacctagcgtcgtcgctgatagcgcctattgaatttccataaacctagGGTGCTGAATTGATGAGCAAACACGGAGTCAACGTTCCGAGAGGCGTGGCTGTTTCCTCTGTTGAAGAGGCCAGAAAGGTCATCAAGGACCTTTTCCCTA
species | Glycine max |
transcript | GLYMA10G04480.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAAAATGGCAGCACAATCAACTCCGCCGCCTCAACATCCACGAGTACCAG GGTGCTGAATTGATGAGCAAACACGGAGTCAACGTTCCGAGAGGCGTGGCTEST: gi|298184950|gb|HO030163.1|HO030163
genomic: GAAAATGGCAGCACAATCAACTCCGCCGCCTCAACATCCACGAGTACCAGgtctctctct ... ataaacctagGGTGCTGAATTGATGAGCAAACACGGAGTCAACGTTCCGAGAGGCGTGGCT
EST: GAAAATGGCAGCACAATCAACTCCGCCGCCTCAACATCCACGAGTACCAG GGTGCTGAATTGATGAGCAAACACGGAGTCAACGTTCCGAGAGGCGTGGCTEST: gi|298176586|gb|HO023173.1|HO023173
genomic: GAAAATGGCAGCACAATCAACTCCGCCGCCTCAACATCCACGAGTACCAGgtctctctct ... ataaacctagGGTGCTGAATTGATGAGCAAACACGGAGTCAACGTTCCGAGAGGCGTGGCT
EST: GAAAATGGCAGCACAATCAACTCCGCCGCCTCAACATCCACGAGTACCAG GGTGCTGAATTGATGAGCAAACACGGAGTCAACGTTCCGAGAGGCGTGGCTEST: gi|61241640|gb|DN591031.1|DN591031
genomic: GAAAATGGCAGCACAATCAACTCCGCCGCCTCAACATCCACGAGTACCAGgtctctctct ... ataaacctagGGTGCTGAATTGATGAGCAAACACGGAGTCAACGTTCCGAGAGGCGTGGCT
EST: GAAAATGGCAGCACAATCAACTCCGCCGCCTCAACATCCACGAGTACCAG GGTGCTGAATTGATGAGCAAACACGGAGTCAACGTTCCGAGAGGCGTGGCTEST: gi|19347335|gb|BM892215.1|BM892215
genomic: GAAAATGGCAGCACAATCAACTCCGCCGCCTCAACATCCACGAGTACCAGgtctctctct ... ataaacctagGGTGCTGAATTGATGAGCAAACACGGAGTCAACGTTCCGAGAGGCGTGGCT
EST: GAAAATGGCAGCACAATCAACTCCGCCGCCTCAACATCCACGAGTACCAG GGTGCTGAATTGATGAGCAAACACGGAGTCAACGTTCCGAGAGGCGTGGCTEST: gi|4284430|gb|AI440780.1|AI440780
genomic: GAAAATGGCAGCACAATCAACTCCGCCGCCTCAACATCCACGAGTACCAGgtctctctct ... ataaacctagGGTGCTGAATTGATGAGCAAACACGGAGTCAACGTTCCGAGAGGCGTGGCT
EST: GAAAATGGCAGCACAATCAACTCCGCCGCCTCAACATCCACGAGTACCAG GGTGCTGAATTGATGAGCAAACACGGAGTCAACGTTCCGAGAGGCGTGGCTEST: gi|209712883|gb|BW679160.1|BW679160
genomic: GAAAATGGCAGCACAATCAACTCCGCCGCCTCAACATCCACGAGTACCAGgtctctctct ... ataaacctagGGTGCTGAATTGATGAGCAAACACGGAGTCAACGTTCCGAGAGGCGTGGCT
EST: GAAAATGGCAGCACAATCAACTCCGCCGCCTCAACATCCACGAGTACCAG GGTGCTGAATTGATGAGCAAACACGGAGTCAACGTTCCGAGAGGCGTGGCTEST: gi|192308759|gb|FG999784.1|FG999784
genomic: GAAAATGGCAGCACAATCAACTCCGCCGCCTCAACATCCACGAGTACCAGgtctctctct ... ataaacctagGGTGCTGAATTGATGAGCAAACACGGAGTCAACGTTCCGAGAGGCGTGGCT
EST: GAAAATGGCAGCACAATCAACTCCGCCGCCTCAACATCCACGAGTACCAG GGTGCTGAATTGATGAGCAAACACGGAGTCAACGTTCCGAGAGGCGTGGCTEST: gi|151397308|gb|EV267181.1|EV267181
genomic: GAAAATGGCAGCACAATCAACTCCGCCGCCTCAACATCCACGAGTACCAGgtctctctct ... ataaacctagGGTGCTGAATTGATGAGCAAACACGGAGTCAACGTTCCGAGAGGCGTGGCT
EST: GAAAATGGCAGCACAATCAACTCCGCCGCCTCAACATCCACGAGTACCAG GGTGCTGAATTGATGAGCAAACACGGAGTCAACGTTCCGAGAGGCGTGGCTEST: gi|4260145|gb|AI416641.1|AI416641
genomic: GAAAATGGCAGCACAATCAACTCCGCCGCCTCAACATCCACGAGTACCAGgtctctctct ... ataaacctagGGTGCTGAATTGATGAGCAAACACGGAGTCAACGTTCCGAGAGGCGTGGCT
EST: GAAAATGGCAGCACAATCAACTCCGCCGCCTCAACATCCACGAGTACCAG GGTGCTGAATTGATGAGCAAACACGGAGTCAACGTTCCGAGAGGCGTGGCTEST: gi|151409274|gb|EV279082.1|EV279082
genomic: GAAAATGGCAGCACAATCAACTCCGCCGCCTCAACATCCACGAGTACCAGgtctctctct ... ataaacctagGGTGCTGAATTGATGAGCAAACACGGAGTCAACGTTCCGAGAGGCGTGGCT
EST: GAAAATGGCAGCACAATCAACTCCGCCGCCTCAACATCCACGAGTACCAG GGTGCTGAATTGACGAGCAAACACGGAGTCAACGTTCCGAGAGGCGTGGCT
genomic: GAAAATGGCAGCACAATCAACTCCGCCGCCTCAACATCCACGAGTACCAGgtctctctct ... ataaacctagGGTGCTGAATTGATGAGCAAACACGGAGTCAACGTTCCGAGAGGCGTGGCT
aatgattgacctagcgtcgtcgctgatagcgcctattgaatttccataaacctagGGTGCTGAATTGATGAGCAAACACGGAGTCAACGTTCCGAGAGGCGTGGCTGTTTCCTCTGTTGAAGAGGCCAGAAAGGTCATCAAGGACCTTTTCCCTA
tttccat CT-rich tract
tattgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgtgaaatcgtgtatgtttatttgtattgaagctctttgattgaatgattgacctagcgtcgtcgctgatagcgcctattgaatttccataaacctagGGTGCTGAATTGATGAGCAAACACGGAGTCAACGTTCCGAGAGGCGTGGCTGTTTCCTCTGTTGAAGAGGCCAGAAAGGTCATCAAGGACCTTTTCCCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - tgtatgt
- - - - - - - - - - - - - - - - - - - - - -tgaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtcgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctattg