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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atttcccctttttaggttcttttgtgtgtgtgtggtttaatttttaatttgatttttggtttctgttgaaaaggatactgataagttgttgtttcatgagTTTGGTTTCACAGCTGCTGAGATGTCTGGGGAAGTTTTTGATGGACAAGATGCAGGCTATGTGCCTGAGAACCCTGAGTTTCCGCAAAACCATTCTGACG

Basic information

species Glycine max
transcript GLYMA10G03910.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21887068|gb|BQ740281.1|BQ740281
EST:     GTCTTCCGAAGCTTCGACAATCATAGATA                         TTTGGTTTCACAGCTGCTGAGATGTCTGGGGAAGTTTTTGATGGACAAGAT
genomic: GTCTTCCGAAGCTTCGACAATCATAGATAgtaagttctg ... gtttcatgagTTTGGTTTCACAGCTGCTGAGATGTCTGGGGAAGTTTTTGATGGACAAGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttgatttttggtttctgttgaaaaggatactgataagttgttgtttcatgagTTTGGTTTCACAGCTGCTGAGATGTCTGGGGAAGTTTTTGATGGACAAGATGCAGGCTATGTGCCTGAGAACCCTGAGTTTCCGCAAAACCATTCTGACG
                              tactgat  putative branch site (score: 2)
                                           ttgtttc  putative PPT
      attttt  TA-rich tract