Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58020985|gb|CX707727.1|CX707727EST: CCGAAGGAGAAGAATCTTCCTCTTCTCGATCCCGCAAAGCCTCCTGCCAA GGCGCAAGTGGTGGGATGGCCACCTGTAAGGTCTTTCCGGAAGAACATGTT
genomic: CCGAAGGAGAAGAATCTTCCTCTTCTCGATCCCGCAAAGCCTCCTGCCAAgtaagtacta ... aacattttagGGCGCAAGTGGTGGGATGGCCACCTGTAAGGTCTTTCCGGAAGAACATGTT
EST:
gi|58021055|gb|CX707797.1|CX707797EST: CCGAAGGAGAAGAATCTTCCTCTTCTCGATCCCGCAAAGCCTCCTGCCAA GGCGCAAGTGGTGGGATGGCCACCTGTAAGGTCTTTCCGGAAGAACATGTT
genomic: CCGAAGGAGAAGAATCTTCCTCTTCTCGATCCCGCAAAGCCTCCTGCCAAgtaagtacta ... aacattttagGGCGCAAGTGGTGGGATGGCCACCTGTAAGGTCTTTCCGGAAGAACATGTT
EST:
gi|58017693|gb|CX704435.1|CX704435EST: CCGAAGGAGAAGAATCTTCCTCTTCTCGATCCCGCAAAGCCTCCTGCCAA GGCGCAAGTGGTGGGATGGCCACCTGTAAGGTCTTTCCGGAAGAACATGTT
genomic: CCGAAGGAGAAGAATCTTCCTCTTCTCGATCCCGCAAAGCCTCCTGCCAAgtaagtacta ... aacattttagGGCGCAAGTGGTGGGATGGCCACCTGTAAGGTCTTTCCGGAAGAACATGTT
EST:
gi|9820706|gb|BE556216.1|BE556216EST: CCGAAGGAGAAGAATCTTCCTCTTCTCGATCCCGCAAAGCCTCCTGCCAA GGCGCAAGTGGTGGGATGGCCACCTGTAAGGTCTTTCCGGAAGAACATGTT
genomic: CCGAAGGAGAAGAATCTTCCTCTTCTCGATCCCGCAAAGCCTCCTGCCAAgtaagtacta ... aacattttagGGCGCAAGTGGTGGGATGGCCACCTGTAAGGTCTTTCCGGAAGAACATGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtgaatcaagtgattttacgaatattaatgaattaaaacaaaatgaacattttagGGCGCAAGTGGTGGGATGGCCACCTGTAAGGTCTTTCCGGAAGAACATGTTTGCAGCCCAAAAGAGCAGCGGCGGAGAGGAAAGCGAGAAGAACAGCCCT
tattaat putative branch site (score: 2)
aatattaatgaattaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttcattatatgcataatttcatccccaacccctccaattatgaagtgaatcaagtgattttacgaatattaatgaattaaaacaaaatgaacattttagGGCGCAAGTGGTGGGATGGCCACCTGTAAGGTCTTTCCGGAAGAACATGTTTGCAGCCCAAAAGAGCAGCGGCGGAGAGGAAAGCGAGAAGAACAGCCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC