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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgatctttaaattttaattcttttcttgttatacacattcaattattcattttgtatggattcagctacttgcattgaataaatgttgcgaattccaatcattaagtttaattcaagatttaattgtatgatttgagaaacaaatagGAAATTGTGAGTGCTGGAGGGCGCACAGTGTGGGGAAATCCAGCACAAGTAGGGAGTGTTGTAGGAGGGGAAGTGTTTGATGTGGTCTTGGACAACAATG

Basic information

species Glycine max
transcript GLYMA10G03200.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120529998|gb|EH258132.1|EH258132
EST:     GCGATGAAGGCTCAGACAAGATGAAGAAACCTCCTTTCAACAGATTCTCA                         GAAATTGTGAGTGCTGGAGGGCGCACAGTGTGGGGAAATCCAGCACAAGTA
genomic: GCGATGAAGGCTCAGACAAGATGAAGAAACCTCCTTTCAACAGATTCTCAgtttgtgatc ... aaacaaatagGAAATTGTGAGTGCTGGAGGGCGCACAGTGTGGGGAAATCCAGCACAAGTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttccaatcattaagtttaattcaagatttaattgtatgatttgagaaacaaatagGAAATTGTGAGTGCTGGAGGGCGCACAGTGTGGGGAAATCCAGCACAAGTAGGGAGTGTTGTAGGAGGGGAAGTGTTTGATGTGGTCTTGGACAACAATG
                         atttaat  putative branch site (score: 4)
        attaagtttaattcaa  TA-rich tract