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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttccttctcctttcccactcttttcttgactatttcttagtatctgattgtgttgtgtttctgcactactgttatagATTATGGGGAGCACAAACTCAAAGATCGTTGCAGAACTTCGACATCGGTGGGCCCCGCGAACGCATGCCCGAACCCATCATTCGCGCTTTTGGCGTCTTG

Basic information

species Glycine max
transcript GLYMA10G02040.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G02040.2 (Glycine max), 3'ss of exon 1
lower sequence: AT2G47510.2 (Arabidopsis thaliana), 3'ss of exon 2
gtttgtt-ccttctcctttcccactctt---ttcttgactatttcttagtatctgattgtgttgtgtttc-tgcactac-tgttatagATTATGGGGAGCACAAACTCAAAGATCGTTGCAGAACTTCGACATCGGTGGGCCCCGCGAACGCATGCCCGAACCCATCATTCGCGCTTTTGGCGTCTTG
||| |    ||  || || | ||   |    || |    |||     ||       ||     ||||||  |    |   |||   ||||| |||||||| || || || |||||| ||||||||||||| ||||||||    ||||| || ||||| ||||| ||  | ||||||||||||||||||
gttcgggatctgatctttacgcaacgtcgaattttctcttatcctcgagggaaacgtttcacagtgttttatttgttgtgtgtctcagATTGTGGGGAGCCCAGACGCAGAGATCGCTGCAGAACTTCGAAATCGGTGGTGAGCGCGAGCGAATGCCTGAACCAATTGTCCGCGCTTTTGGCGTCTTG

upper sequence: GLYMA10G02040.2 (Glycine max), 3'ss of exon 1
lower sequence: AT5G50950.2 (Arabidopsis thaliana), 3'ss of exon 1
gtttgttccttctcctttcccactcttttcttgactatttcttagtatctgattgtgttgtgtttctgcacta--ctgttatagATTATGGGGAGCACAAACTCAAAGATCGTTGCAGAACTTCGACATCGGTGGGCCCCGCGAACGCATGCCCGAACCCATCATTCGCGCTTTTGGCGTCTTG
||| |         |||| | |    | || |    || ||   | |    ||| |    | ||| |    |   ||||   ||||||||||||||||| || || |||||| | ||||||||||| || |||||   |||||| || ||||||||||| ||| | || |||||||| ||||||
gttcggaatcagatctttacgatatatatcgttctgatctcgagggaaaatattctcacatttttatttgttgttctgtgtcagATTATGGGGAGCACAGACGCAGAGATCGCTTCAGAACTTCGAGATTGGTGGTGACCGCGAGCGAATGCCCGAACCAATCGTCCGAGCTTTTGGTGTCTTG

upper sequence: GLYMA10G02040.2 (Glycine max), 3'ss of exon 1
lower sequence: Vv07s0005g00880.t01 (Vitis vinifera), 3'ss of exon 2
-----------------gtttgttccttctcctttcccactcttttcttgactatttct--tagtatctgattgtgttgtgtttctgcactactgttat--agATTATGGGGAGCACAAACTCAAAGATCGTTGCAGAACTTCGACATCGGTGGGCCCCGCGAACGCATGCCCGAACCCATCATTCGCGCTTTTGGCGTCTTG
                  | || | |      |||   | |   |||| || ||  | |  || || || ||| | |  | ||| || |||  | |  |  ||||| ||||| ||||||||||||||||| |||||||| || || || |||||    || ||||  ||||| ||||| |||||||| ||||||||| || | 
acggatgtatagaagtgatgtgatacaaaagattta--agttaattctggaataggtatggtaataacttatttt-taatttttttggactgatatctttcagATTGTGGGGTGCACAAACTCAAAGATCATTGCAGAATTTTGATATTGGTGGTGAGCGTGAACAAATGCCTGAACCAATCATTCGAGCTTTTGGCATCCTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209708983|gb|BW653497.1|BW653497
EST:     TTCAGGGAAGAAAGAGATACCTTTGGACCCATTCAAGTTCCCTCCGACAA                         ATTATGGGGAGCACAAACTCAAAGATCGTTGCAGAACTTCGACATCGGTGG
genomic: TTCAGGGAAGAAAGAGATACCTTTGGACCCATTCAAGTTCCCTCCGACAAgtttgttcct ... actgttatagATTATGGGGAGCACAAACTCAAAGATCGTTGCAGAACTTCGACATCGGTGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttgactatttcttagtatctgattgtgttgtgtttctgcactactgttatagATTATGGGGAGCACAAACTCAAAGATCGTTGCAGAACTTCGACATCGGTGGGCCCCGCGAACGCATGCCCGAACCCATCATTCGCGCTTTTGGCGTCTTG
        tatttctta  TA-rich tract