1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttaaaatgacatgttcagaaattgattgataaatctaggaatttgattttctactaaatgcatataaacactaatttataatttggatttgataatttagCCAGGGAAACTCTTGAAACATCATGGTCTGCGCTTTGTAATTTCATCGATAGAGAAGAAGGAATTGGCAGTGGCAGCAACAGCTGAAAAGGATCCCCAGA
species | Glycine max |
transcript | GLYMA10G01770.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACTTGGGGAACTTGGCTTACGATATACCTAGAATCAAG CCAGGGAAACTCTTGAAACATCATGGTCTGCGCTTTGTAACTTCATCGATAEST: gi|209698735|gb|BW660736.1|BW660736
genomic: ACTTGGGGAACTTGGCTTACGATATACCTAGAATCAAGgtatgagact ... gataatttagCCAGGGAAACTCTTGAAACATCATGGTCTGCGCTTTGTAATTTCATCGATA
EST: CTCAGATGTCACACTTGGGGAACTTGGCTTACGATATACCTAGAATCAAG CCAGGGAAACTCTTGAAACATCATGGTCCGCGCTTTGTAACTTCATCGATAEST: gi|208026964|gb|GD824466.1|GD824466
genomic: CTCAGATGTCACACTTGGGGAACTTGGCTTACGATATACCTAGAATCAAGgtatgagact ... gataatttagCCAGGGAAACTCTTGAAACATCATGGTCTGCGCTTTGTAATTTCATCGATA
EST: CACTTGGGGAACTTGGCTTACGATATACCTAGAATCAAG CCAGGGAAACTCTTGAAACATCATGGTCTGCGCTTTGTAACTTCATCGATA
genomic: CACTTGGGGAACTTGGCTTACGATATACCTAGAATCAAGgtatgagact ... gataatttagCCAGGGAAACTCTTGAAACATCATGGTCTGCGCTTTGTAATTTCATCGATA
attttctactaaatgcatataaacactaatttataatttggatttgataatttagCCAGGGAAACTCTTGAAACATCATGGTCTGCGCTTTGTAATTTCATCGATAGAGAAGAAGGAATTGGCAGTGGCAGCAACAGCTGAAAAGGATCCCCAGA
atataaacactaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaaaatgacatgttcagaaattgattgataaatctaggaatttgattttctactaaatgcatataaacactaatttataatttggatttgataatttagCCAGGGAAACTCTTGAAACATCATGGTCTGCGCTTTGTAATTTCATCGATAGAGAAGAAGGAATTGGCAGTGGCAGCAACAGCTGAAAAGGATCCCCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - -catgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatat