Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcatttttatttttatcatccctaattttatgtatttattattcttagaattttggatgagtctaatttaactccaaaggctggctcaagtgacaagggctgtcacttatatacactattttgatcatatgactaatccatgtgggattttctaacaattgtgattttgttgaatgttgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGCGTATTTCTCGATGGTGGGTGTCTGCTGCGCCGTATCGGTGGCTTCCTTT

Basic information

species Glycine max
transcript GLYMA10G01750.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G01750.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv07s0005g01250.t01 (Vitis vinifera), 3'ss of exon 1
gtacgcatttttatttttatcatccctaattttatgtatttattattcttagaattttggatgagtctaatttaactccaaaggctggctcaagtgacaagggctgtcacttatatacactattttgatcatatgactaatccatgtgggattttctaacaattgtgattttgttgaatgttg-tggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGCGTATTTCTCGATGGTGGGTGTCTGCTGCGCCGTATCGGTGGCTTCCTTT
       |  | ||| || ||  ||| |||||    |   | || | ||  |  | || |  |||   ||| ||  ||   |   |  | ||| |   |  |||   ||     |   |||   | | || | | |              ||||| |||   || |||||  |  | ||  || ||  | || ||||| ||| |||||  ||| || ||  ||||||||||||||||||| || |||||||||||||| ||||| || || || || ||   ||| || |||
------gtaataattcttttcgaccc-aattt----tgcctgttgtgctcggtttgtttgccgagaa-aatctaggtc---attttttcccaaattttatcggcgaccaaagggaggtactggatagttcctctaa--------------attttttaattgttatgattgagaagtataatgatgactcagGAATCTTCCGAGGCATACGTTCGGTAATTTGCAAAGCAAGATGTTTCCTGCTTATTTCTCGATGGTTGGTGTGTGTTGTGCGGTTTCAACGGCGTCGTTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192324899|gb|FK015380.1|FK015380
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|254333102|gb|GR850352.1|GR850352
EST:     GCTCTGTGGGT-ACA-TCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: GCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|13181379|gb|BG352780.1|BG352780
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|298178312|gb|HO024047.1|HO024047
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|298185228|gb|HO030441.1|HO030441
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|298168161|gb|HO013424.1|HO013424
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|298179649|gb|HO024864.1|HO024864
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|21889211|gb|BQ742424.1|BQ742424
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|192308558|gb|FK002454.1|FK002454
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|6454466|gb|AW185149.1|AW185149
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|151396714|gb|EV266587.1|EV266587
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|308099003|gb|HO760844.1|HO760844
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|21677691|gb|BQ630042.1|BQ630042
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|21888277|gb|BQ741490.1|BQ741490
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|254319296|gb|GR828916.1|GR828916
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|254338549|gb|GR845692.1|GR845692
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|151399204|gb|EV269075.1|EV269075
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|151411778|gb|EV281589.1|EV281589
EST:     TTCGACGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|298197905|gb|HO039444.1|HO039444
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|58018681|gb|CX705423.1|CX705423
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|298178354|gb|HO024089.1|HO024089
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|298197060|gb|HO041803.1|HO041803
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AGATCTGCCGCGGCATCAGTTTGGGAGCCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|37994053|gb|CF805799.1|CF805799
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|41145679|gb|CK605890.1|CK605890
EST:     ATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: ATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|151396279|gb|EV266156.1|EV266156
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|192333748|gb|FK025485.1|FK025485
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGTAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|19346543|gb|BM891423.1|BM891423
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|151400463|gb|EV270277.1|EV270277
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|192331755|gb|FK024859.1|FK024859
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|151408623|gb|EV278431.1|EV278431
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|58024583|gb|CX711324.1|CX711324
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|151405901|gb|EV275716.1|EV275716
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|192332374|gb|FK026039.1|FK026039
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGTAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|192331572|gb|FK019961.1|FK019961
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|24136452|gb|BU926962.1|BU926962
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|298169488|gb|HO020848.1|HO020848
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|21285974|gb|BQ473845.1|BQ473845
EST:     GCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: GCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|298165368|gb|HO011417.1|HO011417
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|298198086|gb|HO039625.1|HO039625
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|192294515|gb|FG987444.1|FG987444
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAAGCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|192317747|gb|FK010165.1|FK010165
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|209729288|gb|BW663614.1|BW663614
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|12773999|gb|BG238926.1|BG238926
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|19452923|gb|BM954333.1|BM954333
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|298167736|gb|HO012999.1|HO012999
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|21888775|gb|BQ741988.1|BQ741988
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|15664499|gb|BI701870.1|BI701870
EST:     ATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: ATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|209709399|gb|BW678917.1|BW678917
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|11411695|gb|BF423765.1|BF423765
EST:     ATCATGTTTAA                         AAATCTGCCGCGGCATCATTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: ATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|10709671|gb|BF009395.1|BF009395
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|298180857|gb|HO022296.1|HO022296
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|192326424|gb|FK015926.1|FK015926
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|298174350|gb|HO017686.1|HO017686
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|298187466|gb|HO034615.1|HO034615
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|298180915|gb|HO022354.1|HO022354
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|18041362|gb|BM309656.1|BM309656
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|8827716|gb|BE211437.1|BE211437
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCG
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCG
EST: gi|13478321|gb|BG507843.1|BG507843
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|298190763|gb|HO032884.1|HO032884
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|209708392|gb|BW665365.1|BW665365
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|151394821|gb|EV264692.1|EV264692
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|58021505|gb|CX708246.1|CX708246
EST:     GGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: GGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|213595444|gb|DB966540.1|DB966540
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|298188266|gb|HO034959.1|HO034959
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|16280102|gb|BI943784.1|BI943784
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|254333101|gb|GR850351.1|GR850351
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|298182255|gb|HO026430.1|HO026430
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
EST: gi|209698088|gb|BW661031.1|BW661031
EST:     TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAA                         AAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC
genomic: TTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAgtacgcattt ... tgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaatccatgtgggattttctaacaattgtgattttgttgaatgttgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGCGTATTTCTCGATGGTGGGTGTCTGCTGCGCCGTATCGGTGGCTTCCTTT
                 ttctaac  putative branch site (score: 1)
              attttctaacaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacgcatttttatttttatcatccctaattttatgtatttattattcttagaattttggatgagtctaatttaactccaaaggctggctcaagtgacaagggctgtcacttatatacactattttgatcatatgactaatccatgtgggattttctaacaattgtgattttgttgaatgttgtggtttagAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGCGTATTTCTCGATGGTGGGTGTCTGCTGCGCCGTATCGGTGGCTTCCTTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC