Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
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 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaatgagttctatggtcgaactgaatatggcctgcttgtggatgcataaaaatttgtttcttatcctgttttgctaataaaatgtttttatcaattgtagGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGGGTCCTGACCAGCCCGTGATCCTCCACATGCTTGACATTCCTCCAGCAGC

Basic information

species Glycine max
transcript GLYMA10G00920.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G00920.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os10g33800.3 (Oryza sativa), 3'ss of exon 1
aaatgagttctatggtcgaactgaatatggcc--tgcttgtggatgcataaaaatttgtttctta---tcctgttttgctaataaaatgtttttatcaatt-gtagGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGGGTCCTGACCAGCCCGTGATCCTCCACATGCTTGACATTCCTCCAGCAGC
        |  ||  | |||   ||||       ||||||||  |    | |||||||   |         | |||||  |   || |  || | | | |  | ||| ||||||||||||||||||||||| |||||||||||||| |||||| ||||| |||||||||| || || || ||||||||||||||||| |||||  |
-----cacttcata-tggaatgcaataccattgttgcttgtgtgtcttaagaaatttgcacccaggggctttcttttgtgagctaattcattcttttattccgcagGACAAATTGGATATGCTCTTGTCCCCATGATTGCTAGGGGTGTGATGTTGGGTGCTGACCAGCCTGTTATTCTACACATGCTTGACATTCCACCAGCTAC

upper sequence: GLYMA10G00920.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G415359_T02 (Zea mays), 3'ss of exon 1
----aaatgagttctatggtcgaactgaatatggcctgcttgtggatgcataaaaatttgtttcttatcctgttttgctaataaaatgtttttatcaattg-tagGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGGGTCCTGACCAGCCCGTGATCCTCCACATGCTTGACATTCCTCCAGCAGC
    ||| | | | | |     ||  | | ||    ||   |    |   |  || ||    || | |   | |  | | |   ||| | ||| |   ||| |||| |||||||||||||| || || || |||||||||||||| || ||||| ||| | |||||||| || || || ||||||||||||||||| ||||||||
cagtaaaagggatttgtac---aaagggacat--tttgaacggatctttctctaatttgtgctcatctttaggtgcgttgagctaatttgtttgttgtttgatagGACAAATTGGATATGCCCTGGTTCCCATGATTGCTAGGGGTGTTATGCTTGGTGCAGACCAGCCTGTTATTCTGCACATGCTTGACATTCCGCCAGCAGC

upper sequence: GLYMA10G00920.1 (Glycine max), 3'ss of exon 1
lower sequence: AT5G43330.1 (Arabidopsis thaliana), 3'ss of exon 1
aaatga--gttctatggtcgaactgaatatggcctgcttgtggatgcat--aaaaatttgtttctt-atcctgttttgctaataaaatgtttttatcaat-tgtagGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGGGTCCTGACCAGCCCGTGATCCTCCACATGCTTGACATTCCTCCAGCAGC
|  | |   |  | || ||  | |   || |   |  |||  |||  ||    || ||||| | |  ||| |||||   |       ||||| | | | | || ||| ||||| |||||||||||||| ||||||||||| |||||  | ||||| ||| |||| ||||| ||||||||||||||||||||||| |||   |||||
attttatcatgatttgttctgattttgtaagctttatttggcgattgatttgtaattttgtgtgtagatcatgtttaagt------gtgtttctgttattgtgcagGACAAATCGGATATGCTCTTGTTCCTATGATTGCAAGGGGGATAATGCTTGGTGCTGATCAGCCTGTGATCCTCCACATGCTTGACATCCCTTTTGCAGC

upper sequence: GLYMA10G00920.1 (Glycine max), 3'ss of exon 1
lower sequence: AT1G04410.1 (Arabidopsis thaliana), 3'ss of exon 1
aaatgagttctatggtcgaactgaatatggcctgcttgtggatgcataaaaa-tttgtttcttatcctgttttgctaataaaatgtttttatcaat-tgtagGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGGGTCCTGACCAGCCCGTGATCCTCCACATGCTTGACATTCCTCCAGCAGC
       ||       ||   |  |||| |   | | | |  |   |    | |||   |||  ||   |  ||  | |||    |  || | | | || ||| ||||| |||||||||||||| ||||||||||| |||||  | ||||| ||| ||||||| || || |||||||||||| | || ||||||||||| ||
--tctgatttagaaaccgttgtttatatagttggatagagtttaagttgtgactttagatctcctcagctactgaaagtaactattgattgtgattatgcagGACAAATCGGATATGCTCTTGTACCTATGATTGCAAGGGGTATCATGCTTGGTGCTGACCAACCTGTTATCCTCCACATGTTGGATATTCCTCCAGCTGC

upper sequence: GLYMA10G00920.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv07s0005g03360.t01 (Vitis vinifera), 3'ss of exon 1
aaatgagttctatggtcga-actgaatatggcc-tgcttgtggatgca-taaaaatttgtttcttatcctgttttgctaataaaatgtttttatcaattgtagGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGGGTCCTGACCAGCCCGTGATCCTCCACATGCTTGACATTCCTCCAGCAGC
 ||| ||  | |   || | |  |   ||     || |  |   | |  |   |||||| ||    |  | || |  |  |||| || ||||   | ||||||| |||||||| ||||| |||||||| ||||||||||||||||||||| ||||| |||| ||||| ||||| || ||||||||||| || ||||| || ||
-aattagacccagattcaatatagtccatttttatgttcctcttttccctttcaatttgcttgggctgattttgttgtggtaaactgattttg--atttgtagGACAAATTGGCTATGCACTTGTCCCCATGATTGCTAGGGGAGTGATGTTGGGTGCTGATCAGCCTGTGATTCTGCACATGCTTGATATCCCTCCTGCTGC

upper sequence: GLYMA10G00920.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv07s0005g03350.t01 (Vitis vinifera), 3'ss of exon 2
aaatgagttctatggtcgaactg----aatatggcctgcttgtggatgcataaaaatttgttt--cttatcctgttttgctaataaaatgtttttatcaattgtagGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGGGTCCTGACCAGCCCGTGATCCTCCACATGCTTGACATTCCTCCAGCAGC
 ||| ||  |||   ||||  |     | | ||   | | | |       |  || ||  |||  || ||  |||| ||    ||||||| ||||   | ||||||| |||||||||||||| |||||||| ||||||||||||||||||||| ||||| |||| ||||| ||||| || ||||||||||| || ||||| || ||
-aattagacctagattcgatatagtccattttgatgttcctcttttcctgttcaatttcttttaactgattttgttgtg---gtaaaatgattttg--atttgtagGACAAATTGGATATGCACTTGTCCCCATGATTGCTAGGGGAGTGATGTTGGGTGCTGATCAGCCTGTGATTCTGCACATGCTTGATATCCCTCCTGCTGC

upper sequence: GLYMA10G00920.1 (Glycine max), 3'ss of exon 1
lower sequence: EFJ10745 (Selaginella moellendorffii), 3'ss of exon 1
aaatgagttctatggtcgaactgaatatggcctgcttgtggatgcataaaaatttgtttcttatcctgttttgctaataaaatgtttttatcaattg-tagGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGGGTCCTGACCAGCCCGTGATCCTCCACATGCTTGACATTCCTCCAGCAGC
                                                || || | |  |||    ||     ||  |   |  ||||      | |  ||||||||| || ||||| || ||||| |||||||| ||||| || ||||| || || |||||||| ||||||||||||||||| || ||||| || || ||
----------------------------------------------gtaagatgtatggctttcgttgacagacttttgcgaaattttcggtgctcgacagGGCAAATCGGGTATGCGCTCGTCCCGATGATTGCGAGGGGCGTCATGCTCGGGCCGGACCAGCCTGTGATCCTCCACATGCTGGATATTCCGCCCGCGGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9900823|gb|BE609791.1|BE609791
EST:     GGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAG                         GGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
genomic: GGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAGgtatggctct ... tcaattgtagGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
EST: gi|7232444|gb|AW567800.1|AW567800
EST:     TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAG                         GGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
genomic: TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAGgtatggctct ... tcaattgtagGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
EST: gi|23729988|gb|BU763100.1|BU763100
EST:     TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAG                         GGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
genomic: TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAGgtatggctct ... tcaattgtagGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
EST: gi|192315472|gb|FK007790.1|FK007790
EST:     TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAG                         GGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
genomic: TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAGgtatggctct ... tcaattgtagGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
EST: gi|7283780|gb|AW596383.1|AW596383
EST:     TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAG                         GGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
genomic: TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAGgtatggctct ... tcaattgtagGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
EST: gi|298168130|gb|HO013393.1|HO013393
EST:     TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAG                         GGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
genomic: TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAGgtatggctct ... tcaattgtagGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
EST: gi|18041416|gb|BM309710.1|BM309710
EST:     TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAG                         GGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
genomic: TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAGgtatggctct ... tcaattgtagGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
EST: gi|7795981|gb|AW781378.1|AW781378
EST:     TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAG                         GGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
genomic: TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAGgtatggctct ... tcaattgtagGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
EST: gi|213595767|gb|DB966210.1|DB966210
EST:     TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAG                         GGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
genomic: TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAGgtatggctct ... tcaattgtagGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
EST: gi|15287807|gb|BI471698.1|BI471698
EST:     TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAG                         GGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
genomic: TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAGgtatggctct ... tcaattgtagGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
EST: gi|33390473|gb|CA853668.1|CA853668
EST:     TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAG                         GGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
genomic: TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAGgtatggctct ... tcaattgtagGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
EST: gi|18733871|gb|BM527860.1|BM527860
EST:     TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAG                         GGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
genomic: TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAGgtatggctct ... tcaattgtagGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
EST: gi|9986046|gb|BE660154.1|BE660154
EST:     TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAG                         GGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
genomic: TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAGgtatggctct ... tcaattgtagGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
EST: gi|209697749|gb|BW655655.1|BW655655
EST:     TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAG                         GGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
genomic: TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAGgtatggctct ... tcaattgtagGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
EST: gi|209724036|gb|BW671630.1|BW671630
EST:     TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAG                         GGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
genomic: TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAGgtatggctct ... tcaattgtagGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
EST: gi|7283514|gb|AW596120.1|AW596120
EST:     TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAG                         GGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
genomic: TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAGgtatggctct ... tcaattgtagGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
EST: gi|14126598|gb|BG791036.1|BG791036
EST:     TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAG                         GGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
genomic: TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAGgtatggctct ... tcaattgtagGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
EST: gi|298199212|gb|HO042575.1|HO042575
EST:     TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAG                         GGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
genomic: TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAGgtatggctct ... tcaattgtagGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
EST: gi|21677618|gb|BQ629969.1|BQ629969
EST:     TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAG                         GGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
genomic: TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAGgtatggctct ... tcaattgtagGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
EST: gi|9563898|gb|BE473407.1|BE473407
EST:     TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAG                         GGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
genomic: TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAGgtatggctct ... tcaattgtagGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
EST: gi|26058299|gb|CA801213.1|CA801213
EST:     TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAG                         GGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
genomic: TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAGgtatggctct ... tcaattgtagGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
EST: gi|10236516|gb|BE805404.1|BE805404
EST:     TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAG                         GGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
genomic: TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAGgtatggctct ... tcaattgtagGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
EST: gi|254319544|gb|GR829056.1|GR829056
EST:     TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAG                         GGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
genomic: TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAGgtatggctct ... tcaattgtagGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
EST: gi|192315471|gb|FK007789.1|FK007789
EST:     TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAG                         GGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
genomic: TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAGgtatggctct ... tcaattgtagGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
EST: gi|9564877|gb|BE474386.1|BE474386
EST:     TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAG                         GGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
genomic: TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAGgtatggctct ... tcaattgtagGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
EST: gi|207706967|gb|GD687151.1|GD687151
EST:     TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAG                         GGCAAATTGGATATGCTCCTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
genomic: TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAGgtatggctct ... tcaattgtagGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
EST: gi|23727283|gb|BU761669.1|BU761669
EST:     TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAG                         GGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
genomic: TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAGgtatggctct ... tcaattgtagGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
EST: gi|27425041|gb|CA936561.1|CA936561
EST:     TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAG                         GGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
genomic: TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAGgtatggctct ... tcaattgtagGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
EST: gi|23727303|gb|BU761681.1|BU761681
EST:     TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAG                         GGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
genomic: TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAGgtatggctct ... tcaattgtagGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
EST: gi|26047376|gb|CA784187.1|CA784187
EST:     TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAG                         GGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
genomic: TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAGgtatggctct ... tcaattgtagGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
EST: gi|8826723|gb|BE210453.1|BE210453
EST:     TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAG                         GGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
genomic: TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAGgtatggctct ... tcaattgtagGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
EST: gi|6567020|gb|AW234647.1|AW234647
EST:     TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAG                         GGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
genomic: TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAGgtatggctct ... tcaattgtagGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
EST: gi|213597821|gb|DB960378.1|DB960378
EST:     TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAG                         GGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
genomic: TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAGgtatggctct ... tcaattgtagGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
EST: gi|7146409|gb|AW508331.1|AW508331
EST:     TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAG                         GGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
genomic: TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAGgtatggctct ... tcaattgtagGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
EST: gi|11411933|gb|BF423944.1|BF423944
EST:     TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAG                         GGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG
genomic: TTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAGgtatggctct ... tcaattgtagGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataaaaatttgtttcttatcctgttttgctaataaaatgtttttatcaattgtagGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGGGTCCTGACCAGCCCGTGATCCTCCACATGCTTGACATTCCTCCAGCAGC
                          tgctaat  putative branch site (score: 2)
                                       tttttatc  putative PPT
                       ttttgctaataaaatg  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aaatgagttctatggtcgaactgaatatggcctgcttgtggatgcataaaaatttgtttcttatcctgttttgctaataaaatgtttttatcaattgtagGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGGGTCCTGACCAGCCCGTGATCCTCCACATGCTTGACATTCCTCCAGCAGC

- - - - - - - - - - - - - - - - tgcttgt
- - - - - - - - - - - - - - - - - - - -ggatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaaa