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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agagattctggcatatgtgtgtgtttattttatttttgttaccctgttatttgattggaaatagtgttgaatgttgtctaattggaatctttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTAGTTGAGGCTTATTCATCCCAGAAACCGGCTTCAAATCCCTTCATAAGCT

Basic information

species Glycine max
transcript GLYMA10G00610.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14125750|gb|BG790188.1|BG790188
EST:     ATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAG                         GACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
genomic: ATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAGgtgaaatccc ... ttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
EST: gi|7925896|gb|AW831922.1|AW831922
EST:     CTTCCACCCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAG                         GACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
genomic: CTTCCACCCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAGgtgaaatccc ... ttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
EST: gi|213594465|gb|DB970031.1|DB970031
EST:     CTTCCACCCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAG                         GACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
genomic: CTTCCACCCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAGgtgaaatccc ... ttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
EST: gi|9987546|gb|BE661654.1|BE661654
EST:     CTTCCACCCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAG                         GACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
genomic: CTTCCACCCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAGgtgaaatccc ... ttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
EST: gi|11274935|gb|BF325260.1|BF325260
EST:     CTTCCACCCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAG                         GACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
genomic: CTTCCACCCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAGgtgaaatccc ... ttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
EST: gi|192294686|gb|FG986535.1|FG986535
EST:     CTTCCACCCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAG                         GACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
genomic: CTTCCACCCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAGgtgaaatccc ... ttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttatttgattggaaatagtgttgaatgttgtctaattggaatctttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTAGTTGAGGCTTATTCATCCCAGAAACCGGCTTCAAATCCCTTCATAAGCT
                              gtctaat  putative branch site (score: 3)
                                          tctttgt  putative PPT
             aaatagt  TA-rich tract