1 5' 3' | 2 5' 3' | 3 5' 3' |
...ggcaaaataaaaatgacaactaattaaattgaattcgaaattaataattctcattttgttcgtacctaattaatgcttttgtttttattttccatgccagGGTTGTGATGCATCAGTACTATTGGATGATACATCGAGTTTCACAGGTGAGAAGACGGCAGGTCCCAACGCTGGTTCGATTAGAGGCTTTGATGTAATAG
species | Glycine max |
transcript | GLYMA09G41450.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCATGGGAGCCTCCTTGCTCCGTCTTCATCTCCATGATTGCTTTGTTCAA GGTTGTGATGCATCAGTACTATTGGATGATACATCGAGTTTCACAGGTGAG
genomic: GCATGGGAGCCTCCTTGCTCCGTCTTCATTTCCATGATTGCTTTGTTCAAgcaagtcaac ... tccatgccagGGTTGTGATGCATCAGTACTATTGGATGATACATCGAGTTTCACAGGTGAG
aattctcattttgttcgtacctaattaatgcttttgtttttattttccatgccagGGTTGTGATGCATCAGTACTATTGGATGATACATCGAGTTTCACAGGTGAGAAGACGGCAGGTCCCAACGCTGGTTCGATTAGAGGCTTTGATGTAATAG
aattaat putative branch site (score: 3)
cttttgtttttatttt CT-rich tract
taattaatgcttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcaaaataaaaatgacaactaattaaattgaattcgaaattaataattctcattttgttcgtacctaattaatgcttttgtttttattttccatgccagGGTTGTGATGCATCAGTACTATTGGATGATACATCGAGTTTCACAGGTGAGAAGACGGCAGGTCCCAACGCTGGTTCGATTAGAGGCTTTGATGTAATAG
- -aaaataa
- - - - - - -tgacaac
- - - - - - - - - - - - - - -tgaattc
- - - - - - - - - - - - - - - - - - gaaattaa