1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tcaacctgtgacttggctattgtgttctgtactttcccttttgttctggttgacttgaaaaaatttgatctgctgacatcggtggtcttccttctttcagGCTTCCATTCATTAAAGTTTACAAGTTTGCGGCTTTCAAACGATTATATGGGGAGTTGTGTGTCTAAG
species | Glycine max |
transcript | GLYMA09G40970.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGTGGTTTTTCACAATCATTACCTCGTTTCAGCTCAATTTTGTTAATTGG GCTTCCATTCATTAAAGTTTACAAGTTTGCGGCTTTCAAACGATTATATGGEST: gi|208330573|gb|GE126358.1|GE126358
genomic: TGTGGTTTTTCACAATCATTACCTCGTTTCAGCTCAATTTTGTTAATTGGgtacgatttg ... cttctttcagGCTTCCATTCATTAAAGTTTACAAGTTTGCGGCTTTCAAACGATTATATGG
EST: TGTGGTTTTTCACAATCATTACCTCGTTTCAGCTCAATTTTGTTAATTGG GCTTCCATTCATTAAAGTTTACAAGTTTGCGGEST: gi|15203337|gb|BI426105.1|BI426105
genomic: TGTGGTTTTTCACAATCATTACCTCGTTTCAGCTCAATTTTGTTAATTGGgtacgatttg ... cttctttcagGCTTCCATTCATTAAAGTTTACAAGTTTGCGG
EST: TGTGGTTTTTCACAATCATTACCTCGTTTCAGCTCAATTTTGTTAATTGG GCTTCCATTCATTAAAGTTTACAAGTTTGCGGCTTTCAAACGATTATATGGEST: gi|7478449|gb|AW666269.1|AW666269
genomic: TGTGGTTTTTCACAATCATTACCTCGTTTCAGCTCAATTTTGTTAATTGGgtacgatttg ... cttctttcagGCTTCCATTCATTAAAGTTTACAAGTTTGCGGCTTTCAAACGATTATATGG
EST: TGTGGTTTTTCACAATCATTACCTCGTTTCAGCTCAATTTTGTTAATTGG GCTTCCATTCATTAAAGTTTACAAGTTTGCGGCTTTCAAACGATTATATGGEST: gi|21257008|gb|BQ453896.1|BQ453896
genomic: TGTGGTTTTTCACAATCATTACCTCGTTTCAGCTCAATTTTGTTAATTGGgtacgatttg ... cttctttcagGCTTCCATTCATTAAAGTTTACAAGTTTGCGGCTTTCAAACGATTATATGG
EST: TGTGGTTTTTCACAATCATTACCTCGTTTCAGCTCAATTTTGTTAATTGG GCTTCCATTCATTAAAGTTTACAAGTTTGCGGCTTTCAAACGATTATATGGEST: gi|13790090|gb|BG652681.1|BG652681
genomic: TGTGGTTTTTCACAATCATTACCTCGTTTCAGCTCAATTTTGTTAATTGGgtacgatttg ... cttctttcagGCTTCCATTCATTAAAGTTTACAAGTTTGCGGCTTTCAAACGATTATATGG
EST: GTTTCAGCTCAATTTTGTTAATTGG GCTTCCATTCATTAAAGTTTACAAGTTTGCGGCTTTCAAACGATTATATGG
genomic: GTTTCAGCTCAATTTTGTTAATTGGgtacgatttg ... cttctttcagGCTTCCATTCATTAAAGTTTACAAGTTTGCGGCTTTCAAACGATTATATGG
ctggttgacttgaaaaaatttgatctgctgacatcggtggtcttccttctttcagGCTTCCATTCATTAAAGTTTACAAGTTTGCGGCTTTCAAACGATTATATGGGGAGTTGTGTGTCTAAG
tgctgac putative branch site (score: 2)
tggtcttccttctttc putative PPT
ttgaaaaaatttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaacctgtgacttggctattgtgttctgtactttcccttttgttctggttgacttgaaaaaatttgatctgctgacatcggtggtcttccttctttcagGCTTCCATTCATTAAAGTTTACAAGTTTGCGGCTTTCAAACGATTATATGGGGAGTTGTGTGTCTAAG
- - cctgtga
- - - - tgacttg
- - - - - - - - - - tgtgttc
- - - - - - - - - - - - - - - -ctttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtggtc