1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aaacttacgcattagtgcttattatctgggatgttttctgccactagtttttttttttattgttttgttttgtttttttaactcaattatttttttatagGGCTTATCTCAACAGCACAAGCGATTACGATCTTTGGCAGATCTTGTTCCTCATGTTAGAAGGAAATCACTTTTAGAGGTTCTTATTAGGAATAATGTTC
species | Glycine max |
transcript | GLYMA09G39550.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
agtttttttttttattgttttgttttgtttttttaactcaattatttttttatagGGCTTATCTCAACAGCACAAGCGATTACGATCTTTGGCAGATCTTGTTCCTCATGTTAGAAGGAAATCACTTTTAGAGGTTCTTATTAGGAATAATGTTC
ttttaac putative branch site (score: 2)
ttattttttt putative PPT
ttttttttattgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaacttacgcattagtgcttattatctgggatgttttctgccactagtttttttttttattgttttgttttgtttttttaactcaattatttttttatagGGCTTATCTCAACAGCACAAGCGATTACGATCTTTGGCAGATCTTGTTCCTCATGTTAGAAGGAAATCACTTTTAGAGGTTCTTATTAGGAATAATGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - -ttagtgc
- - - - - - - - - - - - - - ggatgtt
- - - - - - - - - - - - - - - - - - -ctgccac