1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cttattggatgagtgctcatgcttagtcttgtacatcacccattcatccccttcatcaccttggcatgctttccttcaaaactcagtaattttgttgcagTTGGGAAAGAAGAGAAAAACTTGCCATACTTATTATATTTGCAAGGTGGACCTGGGTTTGAGTGCGGGCGGCCAACTGAATCAGGTGGATGGACTAAAAA
species | Glycine max |
transcript | GLYMA09G39020.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACCCCATTCTTCTCCCAAGATCACTGTTTTCGCTCGTGAAGTCGTTGCAG TTGGGAAAGAAGAGAAAAACTTGCCATACTTATTATATTTGCAAGGTGGACEST: gi|192301724|gb|FG997638.1|FG997638
genomic: ACCCCATTCTTCTCCCAAGATCACTGTTTTCGCTCGTGAAGTCGTTGCAGgtaacattag ... tttgttgcagTTGGGAAAGAAGAGAAAAACTTGCCATACTTATTATATTTGCAAGGTGGAC
EST: ACCCCATTCTTCTCCCAAGATCACTGTTTTCGCTCGTGAAGTCGTTGCAG TTGGGAAAGAAGAGAAAAACTTGCCATACTTATTATATTTGCAAGGTGGAC
genomic: ACCCCATTCTTCTCCCAAGATCACTGTTTTCGCTCGTGAAGTCGTTGCAGgtaacattag ... tttgttgcagTTGGGAAAGAAGAGAAAAACTTGCCATACTTATTATATTTGCAAGGTGGAC
atccccttcatcaccttggcatgctttccttcaaaactcagtaattttgttgcagTTGGGAAAGAAGAGAAAAACTTGCCATACTTATTATATTTGCAAGGTGGACCTGGGTTTGAGTGCGGGCGGCCAACTGAATCAGGTGGATGGACTAAAAA
ttttgtt CT-rich tract
taattttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttattggatgagtgctcatgcttagtcttgtacatcacccattcatccccttcatcaccttggcatgctttccttcaaaactcagtaattttgttgcagTTGGGAAAGAAGAGAAAAACTTGCCATACTTATTATATTTGCAAGGTGGACCTGGGTTTGAGTGCGGGCGGCCAACTGAATCAGGTGGATGGACTAAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - -tgagtgc
- - - - - - - - tcatgct
- - - - - - - - - - - - - -cttgtac
- - - - - - - - - - - - - - - - - - cacccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccttca