1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tctcgaaaagttaagatacataaattgaatttagttcatgaagaagtttatccaagtagagtctttgtatatatatgttatgtattaagatgttttgcagTTGCCAATGATGCTGATAGGAGTGAAATGTCATCTGATACCGCAACCGAGGCATCGTATTCAGAAGCTGATAAGATGGTTGATGGTATGGACTTTGGTGA
species | Glycine max |
transcript | GLYMA09G38490.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CATGCCCTCTTCCTTGCATGATCACCACTACCACTCTTTCTTATTGCGAG TTGCCAATGATGCTGATAGGAGTGAAATGTCATCTGATACCGCAACCGAGGEST: gi|6724437|gb|AW308836.1|AW308836
genomic: CATGCCCTCTTCCTTGCATGATCACCACTACCACTCTTTCTTATTGCGAGgtttcattac ... tgttttgcagTTGCCAATGATGCTGATAGGAGTGAAATGTCATCTGATACCGCAACCGAGG
EST: CATGCCCTCTTCCTTGCATGATCACCACTACCACTCTTTCTTATTGCGAG TTGCCAATGATGCTGATAGGAGTGAAATGTCATCTGATACCGCAACCGAGGEST: gi|151396159|gb|EV266036.1|EV266036
genomic: CATGCCCTCTTCCTTGCATGATCACCACTACCACTCTTTCTTATTGCGAGgtttcattac ... tgttttgcagTTGCCAATGATGCTGATAGGAGTGAAATGTCATCTGATACCGCAACCGAGG
EST: CATGCCCTCTTCCTTGCATGATCACCACTACCACTCTTTCTTATTGCGAG TTGCCAATGATGCTGATAGGAGTGAAATGTCATCTGATACCGCAGCCGAGGEST: gi|151405951|gb|EV275766.1|EV275766
genomic: CATGCCCTCTTCCTTGCATGATCACCACTACCACTCTTTCTTATTGCGAGgtttcattac ... tgttttgcagTTGCCAATGATGCTGATAGGAGTGAAATGTCATCTGATACCGCAACCGAGG
EST: CATGCCCTCTTCCTTGCATGATCACCACTACCACTCTTTCTTATTGCGAG TTGCCAATGATGCTGATAGGAGTGAAATGTCATCTGATACCGCAACCGAGGEST: gi|22523308|gb|BU082119.1|BU082119
genomic: CATGCCCTCTTCCTTGCATGATCACCACTACCACTCTTTCTTATTGCGAGgtttcattac ... tgttttgcagTTGCCAATGATGCTGATAGGAGTGAAATGTCATCTGATACCGCAACCGAGG
EST: CATGCCCTCTTCCTTGCATGATCACCACTACCACTCTTTCTTATTGCGAG TTGCCAATGATGCTGATAGGAGTGAAATGTCATCTGATACCGCAACCGAGG
genomic: CATGCCCTCTTCCTTGCATGATCACCACTACCACTCTTTCTTATTGCGAGgtttcattac ... tgttttgcagTTGCCAATGATGCTGATAGGAGTGAAATGTCATCTGATACCGCAACCGAGG
gtttatccaagtagagtctttgtatatatatgttatgtattaagatgttttgcagTTGCCAATGATGCTGATAGGAGTGAAATGTCATCTGATACCGCAACCGAGGCATCGTATTCAGAAGCTGATAAGATGGTTGATGGTATGGACTTTGGTGA
tatatatatgttatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctcgaaaagttaagatacataaattgaatttagttcatgaagaagtttatccaagtagagtctttgtatatatatgttatgtattaagatgttttgcagTTGCCAATGATGCTGATAGGAGTGAAATGTCATCTGATACCGCAACCGAGGCATCGTATTCAGAAGCTGATAAGATGGTTGATGGTATGGACTTTGGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - ttcatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtctttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttatg