Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactctctctctaattatgttgaaattctattaaattgtggtttttttggggggtagaatttttccttactgttaaaaattggtgctttttgatgaatcctaaatgggtttttgtttgtttggtgtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTT

Basic information

species Glycine max
transcript GLYMA09G37570.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G37570.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G150616_T01 (Zea mays), 3'ss of exon 1
gtactctctctctaattatgttgaaattctattaaattgtggtttttttggggggtagaatttttccttactgttaa--aaattggtgctttttgatgaatcctaaatgggtttttgtttgtttggt--gtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTT
                   || |  || |     ||   |  |  |||   |   | |   |  |   | | |||       ||  |   || || ||  |     || | | || ||| | ||  |  | ||||||||||| |||||||||||| | |||||| ||||||||| |||| |||||| |  ||| ||| || 
-------------------gtgggtatccgtcctaaggat--tcctttcaagctctggggatcatgggtgcagttcgctggtttattctcttctgttggtttgcttattgttgttggttcgctttttccgcagATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTC

upper sequence: GLYMA09G37570.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G146670_T01 (Zea mays), 3'ss of exon 1
--gtactctctctctaattatgttgaaattctattaaattgtggt-ttttttggggggtagaatttttccttactgttaaaaattggtgctttttgatgaatcctaaatgggtttttgtttgtttggt--gtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTT
  |    | |   |   |    ||      | |   | |  |    |  | |||||   |    |     |  ||  |     ||  |   ||||| ||  |     ||   |||  ||| ||||  |  | ||||||||||| |||||||||||| |  ||||| ||||||||| |||| ||||||    ||| ||| |||
gtgggtgcccgtccatctcgccttccttccccacggattcctttcatcctctggggatcatgggtggagttcgctagt-----ttattctcttttgttggtttggttatcattttcggttcgtttttttcgcagATCTGCTGTACAAGGACTACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTT

upper sequence: GLYMA09G37570.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G115049_T01 (Zea mays), 3'ss of exon 1
gtactctctctctaattatgttgaaattctattaaattgtggtttt----tttggggggtagaatttttccttactgttaaaaattggtgctttttgatgaatcctaaatgggtttttgtttgtttggt-gtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTT
          || |  |     |   |    |  | ||| || |||    | ||     |    || || |     ||       |  |  | || | ||  |  |    | | ||||  | ||  |   | |||||| || |  |||||||||||||  ||||||||||||||  ||||||||||| |  |||  |||| |
--------gttcgagctgccgcgtcctctcttggatttggggctttagcttctgtcatttgcgcttgtttcagctcgtgggttgctaatattgttggctg--ttgtcgcggtgcttttcctcgtgggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT

upper sequence: GLYMA09G37570.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G155021_T01 (Zea mays), 3'ss of exon 1
gtactctctctctaattatgttgaaattctattaaattgtggttttt-ttggggggtagaatttttccttactgttaaaaattggtgctttttgatgaatcctaa-atgggtttttgtttgtttggtgtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTT
                  | ||| |   |   |      |  |  ||       | |  || |  || | |   | |    |    |     || |  ||||| |   | ||| ||     ||  | | ||||||||||| |||||||||| |||   ||||||||||| || ||||||||| ||| |||| ||| || 
-----------------gtcttgcacgccatctctgccctcctccttacctcctgatttaagtactcttcatgttcaccggtgcccggcaactgtttcatcctgacgcgtgttgtttccctttgcgcgcagATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTCCCTCACCACCTGCTCCCCCAATGGCGTC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213600252|gb|DB970272.1|DB970272
EST:     CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGG                         ATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
genomic: CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGGgtactctctc ... tttggtgtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
EST: gi|16347641|gb|BI973236.1|BI973236
EST:     CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGG                         ATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
genomic: CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGGgtactctctc ... tttggtgtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
EST: gi|298172878|gb|HO019862.1|HO019862
EST:     CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGG                         ATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
genomic: CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGGgtactctctc ... tttggtgtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
EST: gi|298168049|gb|HO013312.1|HO013312
EST:     CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGG                         ATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
genomic: CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGGgtactctctc ... tttggtgtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
EST: gi|298191276|gb|HO038755.1|HO038755
EST:     CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGG                         ATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
genomic: CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGGgtactctctc ... tttggtgtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
EST: gi|151411944|gb|EV281755.1|EV281755
EST:     CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGG                         ATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCA-C-
genomic: CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGGgtactctctc ... tttggtgtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
EST: gi|42723151|gb|CK769050.1|CK769050
EST:     CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGG                         ATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
genomic: CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGGgtactctctc ... tttggtgtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
EST: gi|10709348|gb|BF009072.1|BF009072
EST:     CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGG                         ATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
genomic: CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGGgtactctctc ... tttggtgtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
EST: gi|38193301|gb|CF922507.1|CF922507
EST:     CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGG                         ATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
genomic: CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGGgtactctctc ... tttggtgtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
EST: gi|5770466|gb|AI973640.1|AI973640
EST:     CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGG                         ATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
genomic: CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGGgtactctctc ... tttggtgtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
EST: gi|16347660|gb|BI973263.1|BI973263
EST:     CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGG                         ATCTGCTGTTCAAGGACTACCACTTTGACCAGAAGTTCACCATCACCACCT
genomic: CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGGgtactctctc ... tttggtgtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
EST: gi|207763255|gb|GD735208.1|GD735208
EST:     CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGG                         ATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
genomic: CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGGgtactctctc ... tttggtgtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
EST: gi|15813714|gb|BI785989.1|BI785989
EST:     CATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGG                         ATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
genomic: CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGGgtactctctc ... tttggtgtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
EST: gi|18040621|gb|BM308915.1|BM308915
EST:     CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGG                         ATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
genomic: CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGGgtactctctc ... tttggtgtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
EST: gi|192299447|gb|FG990785.1|FG990785
EST:     CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGG                         ATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
genomic: CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGGgtactctctc ... tttggtgtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
EST: gi|192325787|gb|FK018009.1|FK018009
EST:     CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGG                         ATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
genomic: CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGGgtactctctc ... tttggtgtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
EST: gi|5605752|gb|AI899816.1|AI899816
EST:     GGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGG                         ATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
genomic: GGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGGgtactctctc ... tttggtgtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
EST: gi|10236169|gb|BE805057.1|BE805057
EST:     CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGG                         ATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
genomic: CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGGgtactctctc ... tttggtgtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
EST: gi|209713320|gb|BW684407.1|BW684407
EST:     CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGG                         ATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
genomic: CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGGgtactctctc ... tttggtgtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
EST: gi|298163169|gb|HO011902.1|HO011902
EST:     CATGGCTAAGGGTCCCGGTCCCTACTCTGACATCGGCAAGAAAGCCAGGG                         ATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
genomic: CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGGgtactctctc ... tttggtgtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
EST: gi|298173735|gb|HO017071.1|HO017071
EST:     CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGG                         ATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
genomic: CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGGgtactctctc ... tttggtgtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
EST: gi|298180228|gb|HO025443.1|HO025443
EST:     CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGG                         ATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
genomic: CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGGgtactctctc ... tttggtgtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
EST: gi|4260342|gb|AI416838.1|AI416838
EST:     CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGG                         ATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
genomic: CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGGgtactctctc ... tttggtgtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
EST: gi|193669653|gb|FK613639.1|FK613639
EST:     CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGG                         ATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
genomic: CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGGgtactctctc ... tttggtgtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
EST: gi|16346024|gb|BI971619.1|BI971619
EST:     CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGG                         ATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
genomic: CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGGgtactctctc ... tttggtgtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
EST: gi|15813668|gb|BI785943.1|BI785943
EST:     CATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGG                         ATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
genomic: CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGGgtactctctc ... tttggtgtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
EST: gi|13477601|gb|BG507417.1|BG507417
EST:     CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGG                         ATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
genomic: CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGGgtactctctc ... tttggtgtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
EST: gi|298188638|gb|HO035331.1|HO035331
EST:     CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGG                         ATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
genomic: CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGGgtactctctc ... tttggtgtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
EST: gi|27425671|gb|CA937191.1|CA937191
EST:     CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGG                         ATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
genomic: CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGGgtactctctc ... tttggtgtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
EST: gi|10847550|gb|BF070219.1|BF070219
EST:     CATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGG                         ATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
genomic: CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGGgtactctctc ... tttggtgtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
EST: gi|6455596|gb|AW186279.1|AW186279
EST:     CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGG                         ATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
genomic: CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGGgtactctctc ... tttggtgtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
EST: gi|26045822|gb|CA783291.1|CA783291
EST:     CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCTAGAAAGCCAGGG                         ATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
genomic: CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGGgtactctctc ... tttggtgtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
EST: gi|37997016|gb|CF808605.1|CF808605
EST:     CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGG                         ATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
genomic: CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGGgtactctctc ... tttggtgtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
EST: gi|16347806|gb|BI973401.1|BI973401
EST:     CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGG                         ATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
genomic: CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGGgtactctctc ... tttggtgtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
EST: gi|48574785|gb|CO036076.1|CO036076
EST:     CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGG                         ATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
genomic: CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGGgtactctctc ... tttggtgtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
EST: gi|7588768|gb|AW704556.1|AW704556
EST:     CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGG                         ATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
genomic: CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGGgtactctctc ... tttggtgtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
EST: gi|151404231|gb|EV274041.1|EV274041
EST:     CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGG                         ATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
genomic: CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGGgtactctctc ... tttggtgtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
EST: gi|38192679|gb|CF921885.1|CF921885
EST:     CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGG                         ATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
genomic: CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGGgtactctctc ... tttggtgtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
EST: gi|192329007|gb|FK019706.1|FK019706
EST:     CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGG                         ATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT
genomic: CATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAAAGCCAGGGgtactctctc ... tttggtgtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaaaattggtgctttttgatgaatcctaaatgggtttttgtttgtttggtgtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTT
                        tcctaaa  putative branch site (score: 2)
                                         tttgttt  putative PPT
                                   tttttgttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtactctctctctaattatgttgaaattctattaaattgtggtttttttggggggtagaatttttccttactgttaaaaattggtgctttttgatgaatcctaaatgggtttttgtttgtttggtgtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT