1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtccctctccttcccttttctcttctcttctcttctctttctttcgctttttcctttcttcattcttcctttctattctctccgcagATTCTGCATCATTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGAGCTTCAAGAAATTCAGGACAACATTCGAAGTCGGAGGAACAAAATCTTC
species | Glycine max |
transcript | GLYMA09G36770.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGG ATTCTGCATCATTGAAGG-CTCTTTACTGTACAGGATTTTGCCAAGATGGAEST: gi|4300666|gb|AI443080.1|AI443080
genomic: ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGGgtccctctcc ... ctctccgcagATTCTGCATCATTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGA
EST: ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGG ATTCTGCATCATTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGAEST: gi|9987763|gb|BE661871.1|BE661871
genomic: ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGGgtccctctcc ... ctctccgcagATTCTGCATCATTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGA
EST: ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGG ATTCTGCATCATTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGAEST: gi|298165597|gb|HO011646.1|HO011646
genomic: ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGGgtccctctcc ... ctctccgcagATTCTGCATCATTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGA
EST: ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGG ATTCTGCATCATTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGAEST: gi|19270747|gb|BM887003.1|BM887003
genomic: ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGGgtccctctcc ... ctctccgcagATTCTGCATCATTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGA
EST: ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGG ATTCTGCATCATTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGAEST: gi|15813355|gb|BI785630.1|BI785630
genomic: ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGGgtccctctcc ... ctctccgcagATTCTGCATCATTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGA
EST: ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGG ATTCTGCATCATTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGAEST: gi|298195324|gb|HO039155.1|HO039155
genomic: ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGGgtccctctcc ... ctctccgcagATTCTGCATCATTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGA
EST: ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGG ATTCTGCATCACTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGAEST: gi|298181545|gb|HO025720.1|HO025720
genomic: ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGGgtccctctcc ... ctctccgcagATTCTGCATCATTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGA
EST: ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGG ATTCTGCATCATTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGAEST: gi|27424921|gb|CA936441.1|CA936441
genomic: ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGGgtccctctcc ... ctctccgcagATTCTGCATCATTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGA
EST: ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGG ATTCTGCATCATTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGAEST: gi|298164288|gb|HO013933.1|HO013933
genomic: ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGGgtccctctcc ... ctctccgcagATTCTGCATCATTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGA
EST: ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGG ATTCTACATCATTGAAGGCTCCGAAACTGTACAGGATTTTGCCAAGATGGAEST: gi|254342695|gb|GR858857.1|GR858857
genomic: ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGGgtccctctcc ... ctctccgcagATTCTGCATCATTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGA
EST: ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGG ATTCTGCATCATTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGAEST: gi|151400607|gb|EV270421.1|EV270421
genomic: ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGGgtccctctcc ... ctctccgcagATTCTGCATCATTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGA
EST: ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGG ATTCTGCATCATTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGA
genomic: ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGGgtccctctcc ... ctctccgcagATTCTGCATCATTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGA
ttctctttctttcgctttttcctttcttcattcttcctttctattctctccgcagATTCTGCATCATTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGAGCTTCAAGAAATTCAGGACAACATTCGAAGTCGGAGGAACAAAATCTTC
tctttcgctttttcct CT-rich tract
tttctatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccctctccttcccttttctcttctcttctcttctctttctttcgctttttcctttcttcattcttcctttctattctctccgcagATTCTGCATCATTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGAGCTTCAAGAAATTCAGGACAACATTCGAAGTCGGAGGAACAAAATCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA