1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttcaactcactcttcatgccaacaactctttcactttctttaacggacagacatacagaaatttcaaattttttttttgttatctagGTTTGGCTCTATGTTTAAGTCCCACATTCTAGGTTGTCCCTGCGTGATGATTTCCAGCCCCGAGGCTGCCAAGTTTGTGCTGAACAAAGCTCAACTCTTC
species | Glycine max |
transcript | GLYMA09G35250.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAAATGTATTCTCAAGACCCAAATGTCTTCTTTGCCTCAAAAATAAAAAG GTTTGGCTCTATGTTTAAGTCCCACATTCTAGGTTGTCCCTGCGTGATGATEST: gi|15287883|gb|BI471774.1|BI471774
genomic: CAAATGTATTCTCAAGACCCAAATGTCTTCTTTGCCTCAAAAATAAAAAGgttcaactca ... tgttatctagGTTTGGCTCTATGTTTAAGTCCCACATTCTAGGTTGTCCCTGCGTGATGAT
EST: CAAATGTATTCTCAAGACCCAAATGTCTTCTTTGCCTCAAAAATAAAAAG GTTTGGCTCTATGTTTAAGTCCCACATTCTAGGTTGTCCCTGCGTGATGAT
genomic: CAAATGTATTCTCAAGACCCAAATGTCTTCTTTGCCTCAAAAATAAAAAGgttcaactca ... tgttatctagGTTTGGCTCTATGTTTAAGTCCCACATTCTAGGTTGTCCCTGCGTGATGAT
actttctttaacggacagacatacagaaatttcaaattttttttttgttatctagGTTTGGCTCTATGTTTAAGTCCCACATTCTAGGTTGTCCCTGCGTGATGATTTCCAGCCCCGAGGCTGCCAAGTTTGTGCTGAACAAAGCTCAACTCTTC
ctttaac putative branch site (score: 3)
ttttttttttgttatc putative PPT
atacagaaatttcaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcaactcactcttcatgccaacaactctttcactttctttaacggacagacatacagaaatttcaaattttttttttgttatctagGTTTGGCTCTATGTTTAAGTCCCACATTCTAGGTTGTCCCTGCGTGATGATTTCCAGCCCCGAGGCTGCCAAGTTTGTGCTGAACAAAGCTCAACTCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA