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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgttagttatctgctattttacactatcttgtgcttatcctattaccttattacataatctaacctgttgtcgtggttgactttaatgtgtaaggtaagCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCACGGAA

Basic information

species Glycine max
transcript GLYMA09G34760.4
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G34760.4 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os06g02510.2 (Oryza sativa), 3'ss of exon 1
ttgttagttatctgctatt-ttacactatcttgtgctta-tcctattaccttattacataat-ctaacctgttgtcgtggttgactttaatgtgtaaggtaagCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCACGGAA-
|  |  | | |    | ||  | ||     | ||      |  ||  |    ||  ||| || || |    ||||  | |||   |||  |||   |||||||  ||  ||||||| ||||| ||||| || ||||| || || ||||||   |||||||||||||||||||| ||||| |||||||| ||||| || || || 
taatctggtgtggatttttgctgcaactgttagtaagagctgttaggaaggaatcgcatgatgcttatggtttgtgtttgtttgatttggtgt---aggtaagGTAAG-CCATGGTGAAGCACAACAACGTCATCCCGAATGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAG

upper sequence: GLYMA09G34760.4 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os03g37970.1 (Oryza sativa), 3'ss of exon 1
----------ttgttagt-tatctgctatt-ttacactatcttgtgcttatcctattacct--tattacataatctaacctgttgtcgtggttgactttaatgtgtaaggtaagCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCACGGAA
          |||   ||  || || | |     |  ||| | | | |  |  || |  ||  | | |  |       | ||||   ||| |   |     |  | | |  | |   | |  ||||| ||||| ||||| |||||||| || || ||||||   |||||||||||||||||||| ||||| ||||||||               
atgtgctcgattgcgcgtgcatatggtctcgccgctgtatatcgggttgttggtagtcgctgatgtgaggtttgtgttcgtgtttgtgtgatgcgcacagGTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAATGGCCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAAC--------------

upper sequence: GLYMA09G34760.4 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os06g02510.3 (Oryza sativa), 3'ss of exon 1
ttgttagttatctgctat-----tttacactatcttgtgctta----tcctattaccttattacataat-ctaacctgttgtcgtggttgactttaatgtgtaaggtaagCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCACGGAA
   | ||| ||||| | |     ||| |   | ||  |  | |    |  ||  |    ||  ||| || || |    ||||  | |||   |||  |||   |||||||  ||  ||||||| ||||| ||||| || ||||| || || ||||||   |||||||||||||||||||| ||||| |||||||| ||||| || |    
--ttcagtaatctggtgtggatttttgctgcaactgttagtaagagctgttaggaaggaatcgcatgatgcttatggtttgtgtttgtttgatttggtgt---agGTAAGGTAAG-CCATGGTGAAGCACAACAACGTCATCCCGAATGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCC----

upper sequence: GLYMA09G34760.4 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G409407_T01 (Zea mays), 3'ss of exon 1
----ttgttagttatctgctattttacactatcttgtgctta-tcctattaccttattacataatctaacctgttgtcgtggttg--actttaatgtgta-------aggtaagCCAAAACC----ATGGTTAAGCATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCACGGAA
    |  || | |||| |   |  |   ||| |  |     |    |     ||   |   |  |  | |  | || |||||||    | || | ||| |       |||||||  | |       ||||| ||||| ||||| |||||||| ||||| ||||||   |||||||||||||||||||| ||||| ||||||                 
tgcctgctttgatatc-gtgctgctgggctaacgaggatggagctttggcggctccgtttgttgttcagctggatgacgtggttattgcattgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTC-----------------

upper sequence: GLYMA09G34760.4 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G081102_T03 (Zea mays), 3'ss of exon 1
--------ttgttagttatctgctattttacactatcttgtgcttatc-ctattaccttattacataat--ctaacctgttgtcgtggttgactt-taatgtgtaaggtaagCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCACGGAA
          |  || |   || |  ||    |  |  ||||||  |  ||  |  ||  | |     |  ||     ||||| |  ||  ||   |||   | |  | |||        ||||| ||||| ||||| || ||||| ||||| ||||||   |||||||||||||||||||| ||||| |||||||| ||            
tggagctggcggcagctcgttgattcttgttcccgtggtgtgctcgttgctcgtctctgctgatgccgtcactgttgcgttgttgatgtgtacaggtaagAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCA------------

upper sequence: GLYMA09G34760.4 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G145280_T01 (Zea mays), 3'ss of exon 1
--------ttgttagttatctgctattttacactatcttg-tgcttatcctattaccttatt-acataatctaacctgttgt--cgtggttgactttaatgt--gtaaggtaagCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCACGGAA
         |||| |      | |  ||     |  | || || || |  |    |     | ||    |      || |||  ||| |||||  |  | ||  | |  | |||        ||||| ||||| ||||| || ||||| ||||| ||||||   |||||||||||||||||||| ||||| ||||||||               
agatggagctgttggcagctcgttgattcttgttcccgtggtgtttgttgttcgtctcggctgacgccgttgctgttgatgtggcgttgttgatgtgcagGTAAGGAGAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAAC--------------

upper sequence: GLYMA09G34760.4 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G081102_T01 (Zea mays), 3'ss of exon 1
-------------ttgttagttatctgctattttacactatcttgtgcttatc-ctattaccttattacataatc--taacctgttgtcgtggttgactt-taatgtgtaaggtaagCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCACGGAA
               |  || |   || |  ||    |  |  ||||||  |  ||  |  ||  | |     ||  |     ||||| |  ||  ||   |||   | |  | |||        ||||| ||||| ||||| || ||||| ||||| ||||||   |||||||||||||||||||| ||||| ||||||                 
tagggtggagctggcggcagctcgttgattcttgttcccgtggtgtgctcgttgctcgtctctgctgatgccgtcactgttgcgttgttgatgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTC-----------------

upper sequence: GLYMA09G34760.4 (Glycine max), 3'ss of exon 1
lower sequence: AT3G49010.1 (Arabidopsis thaliana), 3'ss of exon 1
--ttgttagtta--tctgctattttacactatcttgtgcttatcctatt----accttattacataatctaacctgttgtcgtggttgactttaatgtgtaaggtaagCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCACGGAA
  |||||  | |  | ||   |||||   | |  | | |||   || ||       | || |  | || |||  ||| ||| || ||||  ||  |  | |   | ||   ||   |||   ||||| |||||||||||||| || || ||||||   |||||||||||||| ||||| ||||| |||||||| ||||| ||  |   
ttttgtttttgaagtttgaggttttatcatttgatttccttgagctgtttaaagtttcatcatttgatttaaagtgt-gtc-tgattgatgttttttggcagCTTGAGTTGAAGAAATG---AAGCACAACAATGTTATCCCCAATGGTCACTTCAAAAAGCACTGGCAGAATTATGTCAAGACATGGTTCAACCAGCCTGCCAG---

upper sequence: GLYMA09G34760.4 (Glycine max), 3'ss of exon 1
lower sequence: AT5G23900.1 (Arabidopsis thaliana), 3'ss of exon 1
--ttgttagttatctgctattttacactatcttgtgcttatcctattaccttattacataatctaacctgttgtcgtggt-tgactttaatgtgtaaggtaagCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCACGGAA-------
   ||||  || | |   ||     | ||   |     | |   ||||  ||| | |    | ||   | || || || | | || ||  ||| |   ||     | ||  |||   ||||| ||||| |||||||| | |  |||||| || |||||||||||||| ||||| ||||||||||| || ||||| ||  ||||       
taatgttgcttgtgtaacatg----attagggttgaaatctatgattattttacttctctgtttagtttattctcatgttgtaacatttgtgttt---gttgcttagAAAAATG---AAGCACAACAACGTTATCCCGAGCTCACACTTTCGCAAGCACTGGCAGAATTATGTCAAGACTTGGTTTAACCAGCCTGCCAGGAAGACAAGG

upper sequence: GLYMA09G34760.4 (Glycine max), 3'ss of exon 1
lower sequence: PP1S21_106V6.1 (Physcomitrella patens), 3'ss of exon 1
-------ttgttagttatctgctattttacactatcttgtgcttatcctattaccttattacataatctaacctgttgtcgtggttgactttaatgtgtaaggtaagCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCACGGAA
          ||  |  |    || ||| ||   |    ||  |      |||  |   |    ||   ||| |   ||    | ||   ||  |  | | |   |||    |||||||| ||||||||||| || || || || || ||||||   ||| |||||||||||||||||| |||||||||||| ||||| |||||   
gccctccgccttgatgcttcagtagtttgcatggtgcattgtatcagggtttaggtctgtgggaaaaaaaacgtagggtttctgatggtgttgct-cgcagGTCTAGC----ACCATGGTGAAGCATAACAACGTCATTCCCAATGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACTTGGTTCAACCAGCCCGCACGC--

upper sequence: GLYMA09G34760.4 (Glycine max), 3'ss of exon 1
lower sequence: PP1S47_277V6.1 (Physcomitrella patens), 3'ss of exon 1
---------------------------------------------------------------------------------------------ttgttagttatctgctattttacactatcttgtgcttatcctattaccttattacataatctaacctgttgtcgtg-gttgactttaatgtgtaaggta-----agCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCACGGAA
                                                                                             | ||  ||     | | ||   |   | |  | |   |||   ||  | |      |   |     |||||  ||    | | |||   ||       |      | | |||||||||| |||||||||||||| ||||| |||||||| |||   ||| ||||||| |||||||||| ||| |||||||| ||||| || ||   
gtgtgcctcgccgctcatcttaacattgtacagcttcataggcttccagttgggaaggagtttgtggttgcttgtgcaattccttgtgggagatggtctgtccaaagttcttccccctaaacgggaggcgatctagttctcctgaggggtgtgcatggttgttgatgtatactaagtttttggtcatcaccactcagGGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAAGAAGGACTGGCAAAACTATGTGAGGACGTGGTTCAACCAGCCCGCTCGC--

upper sequence: GLYMA09G34760.4 (Glycine max), 3'ss of exon 1
lower sequence: PP1S459_9V6.2 (Physcomitrella patens), 3'ss of exon 1
----------------------------------------------------------------------------ttgttagttatctgctattttacactatctt--gtgcttatcctattaccttattacataatctaacctgttgtcgtggttgactttaatgtgtaaggtaag-
                                                                             | | ||     | |   |  |    | |||  | ||| |             ||   || | |  | ||    |     ||  | |  ||   || ||| | ||| || |||||| |||||||||||||| ||||| ||||| ||||||   ||| |||||||||||||||||| ||| |||||||| ||||| |||||   
gtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcaggagaattcagctggagctcagcttcggagctgaaggcgacttaggtttgtttagtttttcatgcccactaaactgcttgtcgtgaaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGC--

upper sequence: GLYMA09G34760.4 (Glycine max), 3'ss of exon 1
lower sequence: PP1S459_9V6.1 (Physcomitrella patens), 3'ss of exon 1
----------------------------------------------------------------------------ttgttagttatctgctattttacactatctt--gtgcttatcctattaccttattacataatctaacctgttgtcgtggttgactttaatgtgtaaggtaag-
                                                                             | | ||     | |   |  |    | |||  | ||| |             ||   || | |  | ||    |     ||  | |  ||   || ||| | ||| || |||||| |||||||||||||| ||||| ||||| ||||||   ||| |||||||||||||||||| ||| |||||||| ||||| ||||| ||    
gtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcaggagaattcagctggagctcagcttcggagctgaaggcgacttaggtttgtttagtttttcatgcccactaaactgcttgtcgtgaaaaacgtaggaccagAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAG

upper sequence: GLYMA09G34760.4 (Glycine max), 3'ss of exon 1
lower sequence: PP1S58_38V6.1 (Physcomitrella patens), 3'ss of exon 1
ttgttagttatctgctattttacactatcttgtgcttatcctattaccttattacataatctaacctgttgt-------cgtggttgactttaatgtgtaaggtaagCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCACGGAA
    | || ||    |    | | | || |||| ||| ||       | |  || |   | |||    || |       ||  || |   |   | | |       |     |||||||| |||||||| ||||||||||| || || ||||||   ||| |||||||||||||||||| ||| |||||||| ||||| || ||   
----ttgtgatggagtggcgtgc-cgatgttgttcttgtctcgcattcctcatatagggtttaagggtttatgacataacgatgtcggagtcggtctattttcagGGTTGGCACCATGGTGAAGCATAATAATGTTATCCCCAATGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCCCGC--

upper sequence: GLYMA09G34760.4 (Glycine max), 3'ss of exon 1
lower sequence: PP1S126_52V6.1 (Physcomitrella patens), 3'ss of exon 1
ttgttagttatctgctattttacactatcttgtgcttatcctattaccttattacataatctaacctgttgtcgtggttgacttta--atgtgtaaggtaagC-CAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCACGGAA
 ||| |   |   ||   |||      | ||||  | || |  | |    || |            |||||  || |     |||   ||||||| |  |||     || |||||| |||||||||||||||||||| || || ||||||   ||| ||||||| |||||||||| ||| ||||| || ||||| || || | 
-tgtgatggagtggcgtatttttgtgttgttgttgtaattc-gtgaagcaataattagggtcggattgttgatgtcgcaatttttgtgatgtgtatgtgaagAGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAGAAGGACTGGCAAAACTATGTGAGGACCTGGTTTAACCAGCCCGCCCGCA-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15337650|gb|BI498306.1|BI498306
EST:     ATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: ATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTC-----AGgtaactctca ... gtaagg
EST: gi|209719729|gb|BW669236.1|BW669236
EST:     TCCGCCATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAG                         CCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTTCCGTA
genomic: TCCGCCATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGgtaactctca ... gtaaggtaagCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTTCCGTA
EST: gi|151393189|gb|EV263064.1|EV263064
EST:     CGTAGCTACTGTTCTTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: CGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTC-----AGgtaactctca ... gtaagg
EST: gi|213614480|gb|DB972804.1|DB972804
EST:     GCCATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: GCCATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTC-----AGgtaactctca ... gtaagg
EST: gi|4396384|gb|AI495381.1|AI495381
EST:     AGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: AGCTGCTGTTCTTGCGCGTGAACAAGCCTC-----AGgtaactctca ... gtaagg
EST: gi|151412589|gb|EV282401.1|EV282401
EST:     CGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAG                         CCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTTCCGTA
genomic: CGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGgtaactctca ... gtaaggtaagCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTTCCGTA
EST: gi|298174123|gb|HO017459.1|HO017459
EST:     GGCTCCGCCATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: GGCTCCGCCATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTC-----AGgtaactctca ... gtaagg
EST: gi|9203646|gb|BE329870.1|BE329870
EST:     GTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: GTAGCTGCTGTTCTTGCGCGTGAACAAGCCTC-----AGgtaactctca ... gtaagg
EST: gi|151411721|gb|EV281532.1|EV281532
EST:     CGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: CGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTC-----AGgtaactctca ... gtaagg
EST: gi|192301798|gb|FG994450.1|FG994450
EST:     TTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: TTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTC-----AGgtaactctca ... gtaagg
EST: gi|7232690|gb|AW568044.1|AW568044
EST:     GTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: GTAGCTGCTGTTCTTGCGCGTGAACAAGCCTC-----AGgtaactctca ... gtaagg
EST: gi|209716856|gb|BW679608.1|BW679608
EST:     CATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: CATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTC-----AGgtaactctca ... gtaagg
EST: gi|209707172|gb|BW656790.1|BW656790
EST:     GGCTCCGCCATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: GGCTCCGCCATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTC-----AGgtaactctca ... gtaagg
EST: gi|209706115|gb|BW680859.1|BW680859
EST:     CATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: CATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTC-----AGgtaactctca ... gtaagg
EST: gi|13481580|gb|BG510923.1|BG510923
EST:     GGCTCCGCCATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: GGCTCCGCCATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTC-----AGgtaactctca ... gtaagg
EST: gi|7588772|gb|AW704560.1|AW704560
EST:     ATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: ATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTC-----AGgtaactctca ... gtaagg
EST: gi|21677416|gb|BQ629767.1|BQ629767
EST:     TCTTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: TCTTGCGCGTGAACAAGCCTC-----AGgtaactctca ... gtaagg
EST: gi|209714112|gb|BW679439.1|BW679439
EST:     ATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: ATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTC-----AGgtaactctca ... gtaagg
EST: gi|192304777|gb|FG998793.1|FG998793
EST:     GTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: GTAGCTGCTGTTCTTGCGCGTGAACAAGCCTC-----AGgtaactctca ... gtaagg
EST: gi|192310330|gb|FK002210.1|FK002210
EST:     TTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: TTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTC-----AGgtaactctca ... gtaagg
EST: gi|17021889|gb|BM092923.1|BM092923
EST:     ATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: ATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTC-----AGgtaactctca ... gtaagg
EST: gi|192296167|gb|FG989752.1|FG989752
EST:     CGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: CGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTC-----AGgtaactctca ... gtaagg
EST: gi|192324141|gb|FK017872.1|FK017872
EST:     CGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: CGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTC-----AGgtaactctca ... gtaagg
EST: gi|26049048|gb|CA785501.1|CA785501
EST:     CTTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: CTTGCGCGTGAACAAGCCTC-----AGgtaactctca ... gtaagg
EST: gi|151412263|gb|EV282075.1|EV282075
EST:     CGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: CGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTC-----AGgtaactctca ... gtaagg
EST: gi|151412501|gb|EV282313.1|EV282313
EST:     CGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: CGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTC-----AGgtaactctca ... gtaagg


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accttattacataatctaacctgttgtcgtggttgactttaatgtgtaaggtaagCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCACGGAA
     attacataatctaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttgttagttatctgctattttacactatcttgtgcttatcctattaccttattacataatctaacctgttgtcgtggttgactttaatgtgtaaggtaagCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCACGGAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - tctgcta
- - - - - - - - - - - - - - cttgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtggttg