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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactctcacctctcttcttcctctttgatgcttcattgcaaggcttggtgcatttctcattatagatcttcatttcgctgttacatttccgagacactgctcgttttattcttgttttgaatttcgcgtcttattctgcttctgaagGTGGATTGTTCTTCTGGTTTTGTTCATTGTTTTTCTGGATTCGTAGTGCTTGGGATTTAATTAGAG

Basic information

species Glycine max
transcript GLYMA09G34760.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10844041|gb|BF067378.1|BF067378
EST:     TTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAG                         GTGGATTGTTCTTCTGGTTTTGTTCATTGTTTTTCTGGATTCGTAGTGCTT
genomic: TTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGgtaactctca ... gcttctgaagGTGGATTGTTCTTCTGGTTTTGTTCATTGTTTTTCTGGATTCGTAGTGCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacactgctcgttttattcttgttttgaatttcgcgtcttattctgcttctgaagGTGGATTGTTCTTCTGGTTTTGTTCATTGTTTTTCTGGATTCGTAGTGCTTGGGATTTAATTAGAG
                                    tcttattctgcttct  CT-rich tract
           ttttattcttgttttg  TA-rich tract