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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgttgatgctgttgttgatgctgttgttgttgctgttgctgctgctgtttgtatttcatgtgacttgaaattggttctgattttggtggtttttgctttcagGGAAGACGTTGGCGTTCGGCTTACCGGCGGTTATGCATGTTTTGGGGAAGCGGAAGGGGAAAAGTTCCAAGGGACGAAACCCTCTCGGCCTCGTGCTATC

Basic information

species Glycine max
transcript GLYMA09G34390.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193344076|gb|FK311976.1|FK311976
EST:     TTTCTTATTGGACGGTCGTGATTTGATTGGAATTGCTGCCACTGGCTCAG                         GGAAGACGTTGGCGTTCGGCTTACCGGCGGTT
genomic: TTTCTTATTGGACGGTCGTGATTTGATTGGAATTGCTGCCACTGGCTCAGgtgtgttgat ... ttgctttcagGGAAGACGTTGGCGTTCGGCTTACCGGCGGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtatttcatgtgacttgaaattggttctgattttggtggtttttgctttcagGGAAGACGTTGGCGTTCGGCTTACCGGCGGTTATGCATGTTTTGGGGAAGCGGAAGGGGAAAAGTTCCAAGGGACGAAACCCTCTCGGCCTCGTGCTATC
                           ttctgat  putative branch site (score: 3)
                                          tttttgctttc  putative PPT
                 ttgaaatt  TA-rich tract