Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttgacttctattgaaacaatattcatactctgatgtgcatattcttattatagtttaaatttatttgtttgacaaacggttcttcctataaattttcagGCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAGACGAAAATCAACCTTCTCAAGCTTGCACATTTTGCTGTTATAGTTTCTC

Basic information

species Glycine max
transcript GLYMA09G34310.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G34310.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os03g11570.1 (Oryza sativa), 3'ss of exon 1
--gttgacttctattgaaacaatattcatactctgatgtgcatattct-tattatagtttaaatttatttgtttgacaaacggttcttcctataaattttcagGCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAGACGAAAATCAACCTTCTCAAGCTTGCACATTTTGCTGTTATAGTTTCTC
   || |||  | |||    ||  ||    ||  | | || |  | || | || |   ||     | ||||     | ||| |      | ||     | ||| | |||||  |  | |||||  | ||  ||||||||||||| || || |||||||| ||||| |||||||| ||||| ||||| || || || | ||| |
aaatttactcttgttgtttgaacctt---gcttaggtttgtaactgctgtgttgtgccttctgcgtttttgcaattctaacagcggcatccattctcctacagACGGGTGACACCCTCATACAGCTCTACAACAATTTCATCACTGATTTCGAGACGAAGATCAATCTTCTCAAACTTGCGCATTTCGCGGTCATCGCTTCGC

upper sequence: GLYMA09G34310.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os01g32800.1 (Oryza sativa), 3'ss of exon 1
gttgacttctattgaaacaatattca--tactctgatgtgcatattctta---ttatagtttaaatttatttgtttga--caaacggttcttcctataaattttcagGCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAGACGAAAATCAACCTTCTCAAGCTTGCACATTTTGCTGTTATAGTTTCTC
  |  ||   | ||   |||| ||    ||||   |    ||||| ||||   || ||  | |     | |  |   |  | |||||   |   | |       ||| |||| ||  |  | |||||  | ||  ||||||||||| | ||||| |||||||| ||||| |||||||| ||||| || || || || || | ||| |
--tagctg--aatgtttcaatcttggattacttcaacaaccatatgcttagggttttaactgatgggcaatcctgcaattctaacggcattcattct---cccacagACTGGCGACACCATCATACAGCTCTACAACAATTTCATCTCTGACTTCGAGACGAAGATCAATCTTCTCAAACTTGCCCACTTCGCGGTCATCGCTTCAC

upper sequence: GLYMA09G34310.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G083076_T03 (Zea mays), 3'ss of exon 2
-gttgacttctattgaaacaatattcatactctgatgtgcatattcttattatagtttaaatttatttgtttgacaaacggttcttcctataaattttcagGCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAGACGAAAATCAACCTTCTCAAGCTTGCACATTTTGCTGTTATAGTTTCTC
    |  | | | |   | | | |||  | ||   |   | |  |  ||||   ||     ||| | | ||          |    ||| |   | | ||| | || ||  || | || ||  | ||  ||||||||||||| || |||||||| || || || || ||||||||||| |||||||| || |||| |||||
taaagtttgccaattttatattgttccaagtc-atttcacctgctgctatttctgtactcttttgtcttttatgattctaatatcaccttttcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGACCAAGATTAATCTGCTCAAGCTTGCCCATTTTGCGGTGATAGCTTCTC

upper sequence: GLYMA09G34310.1 (Glycine max), 3'ss of exon 1
lower sequence: AT5G45620.2 (Arabidopsis thaliana), 3'ss of exon 1
gttgacttctattgaaacaatattcatactctgatg---tgcatattcttat-tatagtttaaatttatttgtttgacaaacggttcttcctataaattttcagGCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAGACGAAAATCAACCTTCTCAAGCTTGCACATTTTGCTGTTATAGTTTCTC
 ||   || ||  |     |||     | | ||||    | ||  || || | | |  | | ||  | | |  |||  | |   |  ||  | |  |||| ||||||||||||||||| || || || ||||||||||||||||| |||||||||||||| ||||| ||||| |||||||| |||||||||||  | || ||||
-ttaggtttta--gggtttatagatcaattttgattgcttccaagtttttgtgtctgatcttaacctgtgtcattgttataatataattttttttcattt-cagGCTGGTGATGCTTTGATTCAGTTCTATCACAATTTCATCACTGACTTTGAGACGAAGATCAATCTTCTGAAGCTTGCGCATTTTGCTGTGGTGGTCTCTC

upper sequence: GLYMA09G34310.1 (Glycine max), 3'ss of exon 1
lower sequence: AT4G19006.1 (Arabidopsis thaliana), 3'ss of exon 1
-gttgacttctattgaaacaatattcatactctgatgtgcatattcttattatagtttaaatttatttgtttgacaaacggttcttcctataaatttt-cagGCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAGACGAAAATCAACCTTCTCAAGCTTGCACATTTTGCTGTTATAGTTTCTC
 |   | ||    | | |  |||  || |  || |  |  | |   ||   | | ||   | | |  |||||  |    | || |    ||||  ||| |||||||| ||||||||||||||  | ||  ||||||||||||| |||||||||||||  ||||| ||||| |||||||| ||||| |||||| |||| || |
cgaatattttagctcaga-gatacccaaaaactcagctttacaaggtttacagatttgttaatgacgtgtttccccc-tgtttatgttcataatctttgcagGCTGGAGATGCTTTAATACAGCTTTACAACAATTTCATCACTGACTTTGAGACGAGGATCAATCTTCTGAAGCTTGCGCATTTCGCTGTTGTAGTCTCCC

upper sequence: GLYMA09G34310.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv02s0012g02660.t01 (Vitis vinifera), 3'ss of exon 1
--gttgacttctattgaaacaatattcatactctg-atgtgcatattcttattatagtttaaatttatttgtttgacaaacggttcttcctataaattttcagGCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAGACGAAAATCAACCTTCTCAAGCTTGCACATTTTGCTGTTATAGTTTCTC
  | |   | ||  ||      |  | | | ||   || ||   || | |||  |  ||||   |||| |     ||  |   || |   | |  |||| ||||| ||||||||| | || || |||||||| ||||| ||||| ||||||||||| || ||||| ||||||||||| |||||||||||||| ||||||||| 
ttgcttgttcctgatgtggatgttatgaaattcaatatctgtgcatgcatatcctt-tttatggttatctaa--aacttattcttttgtattttcatttgcagGCGGGTGATGCTCTCATTCAGTTATATCATAATTTTATCACTGACTTTGAGACTAAGATCAATCTTCTCAAGCTCGCACATTTTGCTGTCATAGTTTCTA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13790368|gb|BG652959.1|BG652959
EST:     ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAG                         GCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
genomic: ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAGgttcagctct ... aaattttcagGCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
EST: gi|151394684|gb|EV264555.1|EV264555
EST:     ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAG                         GCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
genomic: ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAGgttcagctct ... aaattttcagGCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
EST: gi|10709508|gb|BF009232.1|BF009232
EST:     ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAG                         GCTGGTGATGCTNTAATACAATTATATCACAATTTCATCACAGACTTTGAG
genomic: ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAGgttcagctct ... aaattttcagGCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
EST: gi|207800908|gb|GD776011.1|GD776011
EST:     ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAG                         GCTGGTGATGCTTTAATACAATTATATCACAATTT
genomic: ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAGgttcagctct ... aaattttcagGCTGGTGATGCTTTAATACAATTATATCACAATTT
EST: gi|18732493|gb|BM527075.1|BM527075
EST:     ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAG                         GCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
genomic: ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAGgttcagctct ... aaattttcagGCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
EST: gi|23064108|gb|BU578881.1|BU578881
EST:     ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAG                         GCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
genomic: ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAGgttcagctct ... aaattttcagGCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
EST: gi|6502097|gb|AW203470.1|AW203470
EST:     CCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGGCTCTCGCCGTCTTCCAG                         GCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
genomic: CCAGCTCACTCTCAAGCTCGAGCAGTTTGTGG-CTCTCGCCGTCTTCCAGgttcagctct ... aaattttcagGCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
EST: gi|12689421|gb|BG155818.1|BG155818
EST:     ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAG                         GCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
genomic: ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAGgttcagctct ... aaattttcagGCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
EST: gi|209728563|gb|BW663563.1|BW663563
EST:     ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAG                         GCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
genomic: ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAGgttcagctct ... aaattttcagGCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
EST: gi|8283422|gb|BE020983.1|BE020983
EST:     ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAG                         GCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
genomic: ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAGgttcagctct ... aaattttcagGCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
EST: gi|15663859|gb|BI701230.1|BI701230
EST:     ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAG                         GCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
genomic: ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAGgttcagctct ... aaattttcagGCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
EST: gi|209712942|gb|BW684234.1|BW684234
EST:     ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAG                         GCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
genomic: ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAGgttcagctct ... aaattttcagGCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
EST: gi|8827515|gb|BE211245.1|BE211245
EST:     ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAG                         GCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
genomic: ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAGgttcagctct ... aaattttcagGCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
EST: gi|4284374|gb|AI440773.1|AI440773
EST:     ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAG                         GCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
genomic: ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAGgttcagctct ... aaattttcagGCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
EST: gi|193318607|gb|FK287165.1|FK287165
EST:     ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAG                         GCTGGTGATGCTTTTAAATACAATTATATCACAATTT
genomic: ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAGgttcagctct ... aaattttcagGCTGGTGATGCTTT-AA-TACAATTATATCACAATTT
EST: gi|298166837|gb|HO010276.1|HO010276
EST:     ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTTGCCGTCTTCCAG                         GCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
genomic: ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAGgttcagctct ... aaattttcagGCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
EST: gi|213589570|gb|DB973213.1|DB973213
EST:     ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAG                         GCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
genomic: ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAGgttcagctct ... aaattttcagGCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
EST: gi|207751267|gb|GD722448.1|GD722448
EST:     ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAG                         GCTGGTGATGCTTTAATACAATTATATCACAATTT
genomic: ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAGgttcagctct ... aaattttcagGCTGGTGATGCTTTAATACAATTATATCACAATTT
EST: gi|151403199|gb|EV273009.1|EV273009
EST:     ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAG                         GCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
genomic: ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAGgttcagctct ... aaattttcagGCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
EST: gi|33388068|gb|CA851275.1|CA851275
EST:     ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCCCGCCGTCTTCCAG                         GCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
genomic: ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAGgttcagctct ... aaattttcagGCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
EST: gi|192328077|gb|FK020380.1|FK020380
EST:     ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAG                         GCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
genomic: ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAGgttcagctct ... aaattttcagGCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
EST: gi|298195061|gb|HO043589.1|HO043589
EST:     ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAG                         GCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
genomic: ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAGgttcagctct ... aaattttcagGCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
EST: gi|193300533|gb|FK268036.1|FK268036
EST:     ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAG                         GCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
genomic: ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAGgttcagctct ... aaattttcagGCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
EST: gi|21993893|gb|BQ785421.1|BQ785421
EST:     ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAG                         GCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
genomic: ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAGgttcagctct ... aaattttcagGCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
EST: gi|120493180|gb|EH221347.1|EH221347
EST:     ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAG                         GCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
genomic: ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAGgttcagctct ... aaattttcagGCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
EST: gi|27427204|gb|CA938724.1|CA938724
EST:     ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAG                         GCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
genomic: ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAGgttcagctct ... aaattttcagGCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
EST: gi|10845676|gb|BF068742.1|BF068742
EST:     ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAG                         GCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
genomic: ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAGgttcagctct ... aaattttcagGCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
EST: gi|298174049|gb|HO017385.1|HO017385
EST:     ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAG                         GCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
genomic: ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAGgttcagctct ... aaattttcagGCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
EST: gi|15201147|gb|BI424718.1|BI424718
EST:     ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAG                         GCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
genomic: ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAGgttcagctct ... aaattttcagGCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
EST: gi|15813948|gb|BI786223.1|BI786223
EST:     ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAG                         GCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG
genomic: ACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAGgttcagctct ... aaattttcagGCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattatagtttaaatttatttgtttgacaaacggttcttcctataaattttcagGCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAGACGAAAATCAACCTTCTCAAGCTTGCACATTTTGCTGTTATAGTTTCTC
                      gtttgac  putative branch site (score: 4)
                                                ttttc  putative PPT
     atagtttaaatttatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttgacttctattgaaacaatattcatactctgatgtgcatattcttattatagtttaaatttatttgtttgacaaacggttcttcctataaattttcagGCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAGACGAAAATCAACCTTCTCAAGCTTGCACATTTTGCTGTTATAGTTTCTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - -gaaacaat
- - - - - - - - - - - - catactc
- - - - - - - - - - - - - - - - - - tgcatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtttg