1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtacttacgtcctccctcttcaattcaaatcaaatcagaccaaatcctagtgatatttttgaaccttatcgtaaccaggggttttcttgttttaacatagTCCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG
species | Glycine max |
transcript | GLYMA09G33480.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCAACAAGCCTTTACGTCCTCTCTTCAATGCTGGCTCAGTTTACTACAAG TCCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGACACGEST: gi|193605296|gb|FK558136.1|FK558136
genomic: TCAACAAGCCTTTACGTCCTCTCTTCAATGCTGGCTCAGTTTACTACAAGgtacttacgt ... tttaacatagTCCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG
EST: TCAACAAGCCTTTACGTCCTCTCTTCAATGCTGGCTCAGTTTACTACAAG TCCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGEST: gi|193422559|gb|FK390172.1|FK390172
genomic: TCAACAAGCCTTTACGTCCTCTCTTCAATGCTGGCTCAGTTTACTACAAGgtacttacgt ... tttaacatagTCCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG
EST: TCAACAAGCCTTTACGTCCTCTCTTCAATGCTGGCTCAGTTTACTACAAG TCCTCTTTAGACCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATAEST: gi|208315715|gb|GE114785.1|GE114785
genomic: TCAACAAGCCTTTACGTCCTCTCTTCAATGCTGGCTCAGTTTACTACAAGgtacttacgt ... tttaacatagTCCTCTTT-G-CCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATA
EST: TTTACTACAAG TCCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGEST: gi|193518136|gb|FK473551.1|FK473551
genomic: TTTACTACAAGgtacttacgt ... tttaacatagTCCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG
EST: TCAACAAGCCTTTACGTCCTCTCTTCAATGCTGGCTCAGTTTACTACAAG TCCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGEST: gi|193401889|gb|FK367094.1|FK367094
genomic: TCAACAAGCCTTTACGTCCTCTCTTCAATGCTGGCTCAGTTTACTACAAGgtacttacgt ... tttaacatagTCCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG
EST: CGTCCTCTCTTCAATGCTGGCTCAGTTTACTACAAG TCCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGEST: gi|208248208|gb|GE050762.1|GE050762
genomic: CGTCCTCTCTTCAATGCTGGCTCAGTTTACTACAAGgtacttacgt ... tttaacatagTCCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG
EST: TCAACAAGCCTTTACGTCCTCTCTTCAATGCTGGCTCAGTTTACTACAAG TCCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGEST: gi|208102749|gb|GD897490.1|GD897490
genomic: TCAACAAGCCTTTACGTCCTCTCTTCAATGCTGGCTCAGTTTACTACAAGgtacttacgt ... tttaacatagTCCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG
EST: TCAACAAGCCTTTACGTCCTCTCTTCAATGCTGGCTCAGTTTACTACAAG TCCTCTTTGCCCGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGEST: gi|193721890|gb|FK659438.1|FK659438
genomic: TCAACAAGCCTTTACGTCCTCTCTTCAATGCTGGCTCAGTTTACTACAAGgtacttacgt ... tttaacatagTCCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG
EST: TCAACAAGCCTTTACGTCCTCTCTTCAATGCTGGCTCAGTTTACTACAAG TCCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGEST: gi|208341502|gb|GE137070.1|GE137070
genomic: TCAACAAGCCTTTACGTCCTCTCTTCAATGCTGGCTCAGTTTACTACAAGgtacttacgt ... tttaacatagTCCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG
EST: TCAACAAGCCTTTACGTCCTCTCTTCAATGCTGGCTCAGTTTACTACAAG TCCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGEST: gi|208165341|gb|GD964449.1|GD964449
genomic: TCAACAAGCCTTTACGTCCTCTCTTCAATGCTGGCTCAGTTTACTACAAGgtacttacgt ... tttaacatagTCCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG
EST: TCAACAAGCCTTTACGTCCTCTCTTCAATGCTGGCTCAGTTTACTACAAG TCCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGEST: gi|208046547|gb|GD849103.1|GD849103
genomic: TCAACAAGCCTTTACGTCCTCTCTTCAATGCTGGCTCAGTTTACTACAAGgtacttacgt ... tttaacatagTCCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG
EST: TCAACAAGCCTTTACGTCCTCTCTTCAATGCTGGCTCAGTTTACTACAAG TCCTCTTTGCCTGCTGAAGTTGCGTACGACAATGAGAAAAGCTGTGATACGEST: gi|193730758|gb|FK666138.1|FK666138
genomic: TCAACAAGCCTTTACGTCCTCTCTTCAATGCTGGCTCAGTTTACTACAAGgtacttacgt ... tttaacatagTCCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG
EST: TCAACAGGCCTTTACGTCCTCTCTTCAATGCTGGCTCAGTTTACTACAAG TCCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGEST: gi|207844000|gb|GD815179.1|GD815179
genomic: TCAACAAGCCTTTACGTCCTCTCTTCAATGCTGGCTCAGTTTACTACAAGgtacttacgt ... tttaacatagTCCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG
EST: CAACAAGCCTTTACGTCCTCTCTTCAATGCTGGCTCAGTTTTACTACAAG TCCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGEST: gi|208172749|gb|GD969352.1|GD969352
genomic: CAACAAGCCTTTACGTCCTCTCTTCAATGCTGGCTCAG-TTTACTACAAGgtacttacgt ... tttaacatagTCCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTG
EST: TCAACAAGCCTTTACGTCCTCTCTTCAATGCTGGCTCAGTTTACTACAAG TCCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGEST: gi|208165683|gb|GD964133.1|GD964133
genomic: TCAACAAGCCTTTACGTCCTCTCTTCAATGCTGGCTCAGTTTACTACAAGgtacttacgt ... tttaacatagTCCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG
EST: TCAACAAGCCTTTACGTCCTCTCTTCAATGCTGGCTCAGTTTACTACAAG TCCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGEST: gi|193540875|gb|FK496051.1|FK496051
genomic: TCAACAAGCCTTTACGTCCTCTCTTCAATGCTGGCTCAGTTTACTACAAGgtacttacgt ... tttaacatagTCCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG
EST: TCAACAAGCCTTTACGTCCTCTCTTCAATGCTGGCTCAGTTTACTACAAG TCCTCTTTGCCTGCTGAAGCTGCGTTCGACAATGAGAAAAGCTGTGATACGEST: gi|193636308|gb|FK584009.1|FK584009
genomic: TCAACAAGCCTTTACGTCCTCTCTTCAATGCTGGCTCAGTTTACTACAAGgtacttacgt ... tttaacatagTCCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG
EST: TCAACAAGCCTTTACGTCCTCTCTTCAATGCTGGCTCAGTTTACTACAAG TCCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGEST: gi|208178075|gb|GD975732.1|GD975732
genomic: TCAACAAGCCTTTACGTCCTCTCTTCAATGCTGGCTCAGTTTACTACAAGgtacttacgt ... tttaacatagTCCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG
EST: TCAACAAGCCTTTACGTCCTCTCTTCAATGCTGGCTCAGTTTACTACAAG TCCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGEST: gi|207833163|gb|GD801382.1|GD801382
genomic: TCAACAAGCCTTTACGTCCTCTCTTCAATGCTGGCTCAGTTTACTACAAGgtacttacgt ... tttaacatagTCCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG
EST: TCAACAAGCCTTTACGTCCTCTCTTCAATGCTGGCTCAGTTTACTACAAG TCCTCTTTGCCCGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGEST: gi|208286694|gb|GE085268.1|GE085268
genomic: TCAACAAGCCTTTACGTCCTCTCTTCAATGCTGGCTCAGTTTACTACAAGgtacttacgt ... tttaacatagTCCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG
EST: TCAACAAGCCTTTACGTCCTCTCTTCAATGCTGGCTCAGTTTACTACAAG TCCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGEST: gi|208325102|gb|GE124020.1|GE124020
genomic: TCAACAAGCCTTTACGTCCTCTCTTCAATGCTGGCTCAGTTTACTACAAGgtacttacgt ... tttaacatagTCCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG
EST: TCAACAAGCCTTTACGTCCTCTCTTCAATGCTGGCTCAGTTTACTACAAG TCCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACGEST: gi|208138614|gb|GD939746.1|GD939746
genomic: TCAACAAGCCTTTACGTCCTCTCTTCAATGCTGGCTCAGTTTACTACAAGgtacttacgt ... tttaacatagTCCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG
EST: TCAACAAGCCTTTACGTCCTCTCTTCGATGCTGGCTCAGTTTACTACAAG TCCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG
genomic: TCAACAAGCCTTTACGTCCTCTCTTCAATGCTGGCTCAGTTTACTACAAGgtacttacgt ... tttaacatagTCCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG
cctagtgatatttttgaaccttatcgtaaccaggggttttcttgttttaacatagTCCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG
ttttaac putative branch site (score: 2)
ttttcttgtttt CT-rich tract
ttttcttgttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttacgtcctccctcttcaattcaaatcaaatcagaccaaatcctagtgatatttttgaaccttatcgtaaccaggggttttcttgttttaacatagTCCTCTTTGCCTGCTGAAGCTGCGTACGACAATGAGAAAAGCTGTGATACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG