1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtcccaaccatcattttccatttcaattctcaatttcttttttttttttttgtatatatatgaattttgtcagattctgttactttcttagcatacgcatgtgatttttagttcttaccaattgtgacctaataaggatgaagatgatggagaaaagaggagtagtgagtgattttttatttatttaaattgtggtgcagGACAATGTTTTTGTGCAGTTGCTGTGTTCGATTCAATACCGAGTGATTAAGGAAAACGCTGATGATGCTTTCTATGAGTTGCAAAACCCTCAGGAGCAGA
species | Glycine max |
transcript | GLYMA09G28170.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTCCACCAGGATCTCCTCCCTCGACGTCCGCATCGAAACCAAAACCAAG GACAATGTTTTTGTGCAGTTGCTGTGTTCGATTCAATACCGAGTGATTAAGEST: gi|298164930|gb|HO010927.1|HO010927
genomic: TCTCCACCAGGATCTCCTCCCTCGACGTCCGCATCGAAACCAAAACCAAGgtcccaacca ... tgtggtgcagGACAATGTTTTTGTGCAGTTGCTGTGTTCGATTCAATACCGAGTGATTAAG
EST: TCTCCACCAGGATCTCCTCCCTCGACGTCCGCATCGAAACCAAAACCAAG GACAATGTTTTTGTGCAGTTGCTGTGTTCGATTCAATACCGAGTGATTAAGEST: gi|193639386|gb|FK585627.1|FK585627
genomic: TCTCCACCAGGATCTCCTCCCTCGACGTCCGCATCGAAACCAAAACCAAGgtcccaacca ... tgtggtgcagGACAATGTTTTTGTGCAGTTGCTGTGTTCGATTCAATACCGAGTGATTAAG
EST: TCTCCACCAGGATCTCCTCCCTCGACGTCCGCATCGAAACCAAAACCAAG GACAATGTTTTTGTGCAGTTGCTGTGTTCGATTCAATACCGAGTGATTAAGEST: gi|298198551|gb|HO040090.1|HO040090
genomic: TCTCCACCAGGATCTCCTCCCTCGACGTCCGCATCGAAACCAAAACCAAGgtcccaacca ... tgtggtgcagGACAATGTTTTTGTGCAGTTGCTGTGTTCGATTCAATACCGAGTGATTAAG
EST: TCTCCACCAGGATCTCCTCCCTCGACGTCCGCATCGAAACCAAAACCAAG GACAATGTTTTTGTGCAGTTGCTGTGTTCGATTCAATACCGAGTGATTAAG
genomic: TCTCCACCAGGATCTCCTCCCTCGACGTCCGCATCGAAACCAAAACCAAGgtcccaacca ... tgtggtgcagGACAATGTTTTTGTGCAGTTGCTGTGTTCGATTCAATACCGAGTGATTAAG
gatggagaaaagaggagtagtgagtgattttttatttatttaaattgtggtgcagGACAATGTTTTTGTGCAGTTGCTGTGTTCGATTCAATACCGAGTGATTAAGGAAAACGCTGATGATGCTTTCTATGAGTTGCAAAACCCTCAGGAGCAGA
tagtgagtgatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcccaaccatcattttccatttcaattctcaatttcttttttttttttttgtatatatatgaattttgtcagattctgttactttcttagcatacgcatgtgatttttagttcttaccaattgtgacctaataaggatgaagatgatggagaaaagaggagtagtgagtgattttttatttatttaaattgtggtgcagGACAATGTTTTTGTGCAGTTGCTGTGTTCGATTCAATACCGAGTGATTAAGGAAAACGCTGATGATGCTTTCTATGAGTTGCAAAACCCTCAGGAGCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG