1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cttgaagttctttggccgaactgcttgctagtatcgcagtatggagatttcgtacagatttattgatttaattttggttcattttttaagcttaacaaagATGGGAGCACTTCGGTGGGATGATGTTGTGAATCATCATCAAGCATGGAGACTCGTCACTTGCATTTGGTTGCATGCTGGAGTTGTTCATTTAGCTGCCA
species | Glycine max |
transcript | GLYMA09G26610.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCTTTCAGCCCCTTAGGGAAAATCCGTTATTTGGGCCCTCTTCATCCAC CEST: gi|192306335|gb|FG995115.1|FG995115
genomic: TCCTTTCAGCCCCTTAGGGAAAATCCGTTATTTGGGCCCTCTTCATCCACgtaagagctc ... cttaacaaag-
EST: TCCTTTCAGCCCCTTAGGGAAAATCCGTTATTTGGGCCCTCTTCATCCAC CEST: gi|192306335|gb|FG995115.1|FG995115
genomic: TCCTTTCAGCCCCTTAGGGAAAATCCGTTATTTGGGCCCTCTTCATCCACgtaagagctc ... cttaacaaag-
EST: TCCTTTCAGCCCCTTAGGGAAAATCCGTTATTTGGGCCCTCTTCATCCAC CEST: gi|192306335|gb|FG995115.1|FG995115
genomic: TCCTTTCAGCCCCTTAGGGAAAATCCGTTATTTGGGCCCTCTTCATCCACgtaagagctc ... cttaacaaag-
EST: TCCTTTCAGCCCCTTAGGGAAAATCCGTTATTTGGGCCCTCTTCATCCAC CEST: gi|14259951|gb|BG882859.1|BG882859
genomic: TCCTTTCAGCCCCTTAGGGAAAATCCGTTATTTGGGCCCTCTTCATCCACgtaagagctc ... cttaacaaag-
EST: TCCTTTCAGCCCCTTAGGGAAAATCCGTTATTTGGGCCCTCTTCATCCAC ATGGGAGCACTTCGGTGGGATGATGTTGTGAATCATCATCAAGCATGGAGAEST: gi|151400320|gb|EV270134.1|EV270134
genomic: TCCTTTCAGCCCCTTAGGGAAAATCCGTTATTTGGGCCCTCTTCATCCACgtaagagctc ... cttaacaaagATGGGAGCACTTCGGTGGGATGATGTTGTGAATCATCATCAAGCATGGAGA
EST: TCCTTTCAGCCCCTTAGGGAAAATCCGTTATTTGGGCCCTCTTCATCCAC CEST: gi|151400320|gb|EV270134.1|EV270134
genomic: TCCTTTCAGCCCCTTAGGGAAAATCCGTTATTTGGGCCCTCTTCATCCACgtaagagctc ... cttaacaaag-
EST: TCCTTTCAGCCCCTTAGGGAAAATCCGTTATTTGGGCCCTCTTCATCCAC CEST: gi|151400320|gb|EV270134.1|EV270134
genomic: TCCTTTCAGCCCCTTAGGGAAAATCCGTTATTTGGGCCCTCTTCATCCACgtaagagctc ... cttaacaaag-
EST: TCCTTTCAGCCCCTTAGGGAAAATCCGTTATTTGGGCCCTCTTCATCCAC CEST: gi|151400320|gb|EV270134.1|EV270134
genomic: TCCTTTCAGCCCCTTAGGGAAAATCCGTTATTTGGGCCCTCTTCATCCACgtaagagctc ... cttaacaaag-
EST: TCCTTTCAGCCCCTTAGGGAAAATCCGTTATTTGGGCCCTCTTCATCCAC C
genomic: TCCTTTCAGCCCCTTAGGGAAAATCCGTTATTTGGGCCCTCTTCATCCACgtaagagctc ... cttaacaaag-
gatttcgtacagatttattgatttaattttggttcattttttaagcttaacaaagATGGGAGCACTTCGGTGGGATGATGTTGTGAATCATCATCAAGCATGGAGACTCGTCACTTGCATTTGGTTGCATGCTGGAGTTGTTCATTTAGCTGCCA
gcttaac putative branch site (score: 3)
agatttattgatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgaagttctttggccgaactgcttgctagtatcgcagtatggagatttcgtacagatttattgatttaattttggttcattttttaagcttaacaaagATGGGAGCACTTCGGTGGGATGATGTTGTGAATCATCATCAAGCATGGAGACTCGTCACTTGCATTTGGTTGCATGCTGGAGTTGTTCATTTAGCTGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - -ctttggc
- - - - - - - - - - - gcttgct